BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0007.p
         (183 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3CUD5.1 C3CUD5_BACTU Putative uncharacterized protein                 74   8e-12

>C3CUD5.1 C3CUD5_BACTU Putative uncharacterized protein
          Length = 179

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 16/146 (10%)

Query: 40  EYLAKLSDEGLENLLQEYTKRHELEAITLADWRKDGKLIFDIIFEQPEYQQLEIDFKKRG 99
           EY  + +DE  ++ LQ +  +   + + LA    +  L+ D   EQ   +Q+E D ++  
Sbjct: 44  EYGVEFTDEKTKDFLQVFINKAMTQGMELAG---NPSLVTDYYKEQ---KQIETDNRR-- 95

Query: 100 YGITGLGVLDVESNTFYECGFAHHWQAIQNIIEKSYPRFHEP-LQRMYFDE-TLTEHDGL 157
                 GV+DV  NTFY CG   HW  +  I++  Y   HE  +Q MY  +  + + +G+
Sbjct: 96  ------GVIDVTDNTFYPCGIGEHWLTLSIILKGKYNHLHEAFIQLMYLHKGGVGQFNGI 149

Query: 158 TREELENFIMTNFELYGGTKPLQEYL 183
           TRE L+ FIM  F+  G  +P+QE++
Sbjct: 150 TREYLDEFIMKTFQFVGELQPIQEHI 175


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,154,178,991
Number of extensions: 47082993
Number of successful extensions: 112306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112305
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 56
Effective length of database: 1,864,227,298
Effective search space: 104396728688
Effective search space used: 104396728688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)