BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0005.p
         (232 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8DER7.1 B8DER7_LISMH Putative uncharacterized protein                100   1e-19
A8CXX0.1 A8CXX0_9CHLR Putative uncharacterized protein                 77   1e-12
B1VTT3.1 B1VTT3_STRGG Putative uncharacterized protein                 63   2e-08

>B8DER7.1 B8DER7_LISMH Putative uncharacterized protein
          Length = 212

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 46/245 (18%)

Query: 1   MGCDIHLFVEKRINGVWQVERGVNEPEIEEVRGFIDKSKERGESSAYWERLLEELRQGTM 60
           MGCDIHL VE R                       DK  ++ +     + LL+ +     
Sbjct: 1   MGCDIHLMVEVR-----------------------DKKLDQWKEYDIADELLKNI----- 32

Query: 61  DYIYDGRHYLLFEVLAGVR---------AAHDLKPVSNPKGLPEDISPEAGESAESWGGD 111
                GR+Y LF +LA VR           +   P+ NP+G+P D S +     E+WG D
Sbjct: 33  -----GRNYNLFSILANVRNGVGFANSDTGNAFIPIDNPRGVPNDASEKYIAYVENWGLD 87

Query: 112 GHSHSWLTAAELLAYNWD-QTITREGWVGVEQFKKYLEDGEPSMWSXXXXXXXTKYISNK 170
           GHSHS+L  AEL  Y+W  Q     G++  + + +Y   G+ + ++        K I+N+
Sbjct: 88  GHSHSFLDLAELKKYDWRGQKNKHRGFMNQKDYAEYKRTGKITRYATNVSGESVKKIANE 147

Query: 171 EMKEGIRDGFLFGDPRQYYTLIHWNKSLRDALGKWCSWSLPKLAELAGD---DPESARIV 227
            M   I    +      YYTL+ W +S  ++   +    LP L ++A D   + E  R++
Sbjct: 148 AMDVVISGKVIPDKEADYYTLVEWEESYYESAVNFVDKVLPALEKIANDCNCENEDVRLL 207

Query: 228 FWFDN 232
           F+FD+
Sbjct: 208 FFFDD 212


>A8CXX0.1 A8CXX0_9CHLR Putative uncharacterized protein
          Length = 143

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 35/137 (25%)

Query: 1   MGCDIHLFVEKRINGVWQVERGVNEPEIEEVRGFIDKSKERGESSAYWERLLEELRQGTM 60
           MGCDIH+ +E+R                           ERG           E+ Q   
Sbjct: 1   MGCDIHVHLERR--------------------------DERGR--------FVEIPQVPD 26

Query: 61  DYIYDGRHYLLFEVLAGVRAAHDLKPVSNPKGLPEDISPEAGESAESWGGDGHSHSWLTA 120
           +Y    R+Y  F  LAGVR   ++ P+S+P+GLP D+S    E ++ W  DGHSHSWLT 
Sbjct: 27  EYPLGVRNYSRFAFLAGVRNWANIIPLSSPRGLPHDVSATVREQSDEWDVDGHSHSWLTL 86

Query: 121 AELLAYNWDQTIT-REG 136
            ELL +++DQ +  REG
Sbjct: 87  HELLTFDYDQPLLFREG 103


>B1VTT3.1 B1VTT3_STRGG Putative uncharacterized protein
          Length = 226

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 31/219 (14%)

Query: 30  EVRGFIDKSKERGESSAYWERLLEE-----LRQGTMDYIYDGRHYLLFEVLAGVRAAHDL 84
           ++ GFI+           W+R L+E      R   + ++Y+GR Y  F  L GVR     
Sbjct: 23  DIHGFIE---------CRWDRWLDEDDREWFRAIDLSHLYNGRSYAAFGCLFGVRDTTSF 73

Query: 85  KPVSNPKGLPEDISPEAGESAESWGGDGHSHSWLTAAELLAYNWDQTITREGWVGVEQFK 144
           +P++  +GLP D+S E     E+W  + H  SW++ AEL A +WD  +  E    V +F+
Sbjct: 74  RPLAGHRGLPPDVSKEGLADFETWSDELHGGSWISWAELAAADWDD-VANEVDGCVHEFR 132

Query: 145 KYLEDGEPSMWSXXXXXXXTKYISN-KEMKEGIRDGFLF--------GDPRQYYTLIHWN 195
           +   DG   M            +S   + ++    G ++        GD R     +   
Sbjct: 133 RS-SDGSWRMHGRNTGLTRFAELSGPADARQLYSAGSVYPENTEWPDGDTRFRVGRLRRR 191

Query: 196 KSLRDALGKWCS-WS-LPKLAELAGDDPESARIVFWFDN 232
            ++ D+  +W + WS +  LA+L GD  E  R+V WFDN
Sbjct: 192 DAVPDS--EWGAVWSTMRTLADLHGD--EGVRLVVWFDN 226


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,573,440,511
Number of extensions: 68258565
Number of successful extensions: 181151
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 181150
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 101
Effective length of database: 1,826,543,238
Effective search space: 184480867038
Effective search space used: 184480867038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)