BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0103.0001.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5YA96.1 Q5YA96_9CAUD 14 450 e-124 C3RHF0.1 C3RHF0_9MOLU Putative uncharacterized protein 404 e-111 B0MKW9.1 B0MKW9_9FIRM Putative uncharacterized protein 398 e-109 A6BEU1.1 A6BEU1_9FIRM Putative uncharacterized protein 365 5e-99 Q9A0Q7.1 Q9A0Q7_STRP1 Putative uncharacterized protein 352 4e-95 >Q5YA96.1 Q5YA96_9CAUD 14 Length = 362 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/369 (60%), Positives = 264/369 (71%), Gaps = 16/369 (4%) Query: 1 MQVITGKVQKAKKVVIYGPEGVGKSSLAAQFPRPIFIDTEGSTTEMDVARLPKPSSWEML 60 M + GK+ KA+KVV+YGPEG+GKSS AAQFP IFIDTEGST+ MDVARL KPSSW L Sbjct: 1 MNITKGKIAKAQKVVLYGPEGIGKSSFAAQFPDTIFIDTEGSTSNMDVARLDKPSSWTFL 60 Query: 61 KQQVKWVWQGGQYGTLIIDTIDWAEMLCVESVCSTHQKNGIEDFGYGKGYIFVSEELGRM 120 QQ+++V Q TL+IDTIDWAE + +E +C +QK IEDFGYG GYI + EE+GR Sbjct: 61 LQQIEFVKQHRPGKTLVIDTIDWAERMAIEHICQANQKKSIEDFGYGSGYIKLEEEMGRF 120 Query: 121 LNLLSDVVDAGIHVVLIAHAQIVKFEQPDEMGAYDRYQLKLGQKTASRTAPLVKEWADMV 180 LN+L DVVD GI++VL AHAQI KFEQPDEMGAYDRY+LKLG+KT ++T+ LVKEWADMV Sbjct: 121 LNILQDVVDQGINIVLTAHAQIRKFEQPDEMGAYDRYELKLGKKTTAKTSALVKEWADMV 180 Query: 181 LFINYKTFSIATDKEGKKNKAQGGVRTVYATHHPAWDAKTRHGLPDEFPLDYGHIAHIFN 240 LF+NYKT+S+ATD +GKK+KAQGGVRT+YATHHPAWDAK RHGLPDEFP++Y IAHIFN Sbjct: 181 LFMNYKTYSVATDDKGKKHKAQGGVRTIYATHHPAWDAKNRHGLPDEFPMEYSQIAHIFN 240 Query: 241 TPAPTTNXXXXXXXXXXXXXXXXXTVNQTGNIPNNIPAPVNT-----APPTPSLNSNIPP 295 A T Q P PA T PP P+ N+ + P Sbjct: 241 GKA-------LDNVQETWSAQQPETQPQPEPEPQYEPAQTQTQQPAVEPPAPAENNELDP 293 Query: 296 A----LRELMTLHQVTESEIQQAVFQRNYYPVDTPIANYDPGFVEGVLVAAWSSVLGMIQ 351 A LR+LM VTESEIQ V Q+ YYP++TPI NYDP FVEGVLV AW V GM++ Sbjct: 294 AIPQSLRDLMIQSNVTESEIQAVVSQKGYYPLETPITNYDPSFVEGVLVGAWQQVYGMVE 353 Query: 352 NNRKAVPFN 360 RK +PFN Sbjct: 354 EFRKTLPFN 362 >C3RHF0.1 C3RHF0_9MOLU Putative uncharacterized protein Length = 369 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/358 (55%), Positives = 245/358 (68%), Gaps = 11/358 (3%) Query: 3 VITGKVQKAKKVVIYGPEGVGKSSLAAQFPRPIFIDTEGSTTEMDVARLPKPSSWEMLKQ 62 + G + AKKVV YGPEG+GKS+ A++FP P+FIDTEGST E+DV RLPKP+SW+M+ Q Sbjct: 6 ITDGVINGAKKVVFYGPEGIGKSTFASKFPDPLFIDTEGSTKELDVKRLPKPTSWQMIIQ 65 Query: 63 QVKWVWQGGQYGTLIIDTIDWAEMLCVESVCSTHQKNGIEDFGYGKGYIFVSEELGRMLN 122 +V+W+ Q TL+IDT DWAE LCVE+VCS H K+G+E+FGYG GY +V+EE GR LN Sbjct: 66 EVQWIIQTKPCKTLVIDTADWAERLCVEAVCSRHGKSGVEEFGYGNGYTYVAEEWGRFLN 125 Query: 123 LLSDVVD-AGIHVVLIAHAQIVKFEQPDEMGAYDRYQLKLGQKTASRTAPLVKEWADMVL 181 LL DV+D A I+V+L AHA I KFEQP+EMGAYDRY+LKLG+KT ++TAPL KEWAD+VL Sbjct: 126 LLQDVIDVANINVLLTAHAVIRKFEQPNEMGAYDRYELKLGKKTTAQTAPLTKEWADIVL 185 Query: 182 FINYKTFSIATDKEGKKNKAQGGVRTVYATHHPAWDAKTRHGLPDEFPLDYGHIAHIFNT 241 F NYKTFS+A DKEGKK+KAQGG R +Y THHP WDAK R GLP+E PLDY IAHIFN Sbjct: 186 FANYKTFSVAADKEGKKHKAQGGQRVMYTTHHPCWDAKNRFGLPEEMPLDYTGIAHIFNG 245 Query: 242 PAPTTNXXXXXXXXXXXXXXXXXTVNQTGNIPNNIPAPVNTAPPT---------PSLNSN 292 T V NI I + P P NS Sbjct: 246 IVQNTEINTRSMESVQSQAVQPQ-VESNQNISKKIDQLGSELEPVIKTAEAKVMPQSNSA 304 Query: 293 IPPALRELMTLHQVTESEIQQAVFQRNYYPVDTPIANYDPGFVEGVLVAAWSSVLGMI 350 +P AL +LM VTE E+++AV + YYP +TPI NYD F++GVL+AAW V +I Sbjct: 305 LPRALIDLMNKDLVTEDELKKAVASKGYYPYETPIENYDSSFIDGVLIAAWPQVFKII 362 >B0MKW9.1 B0MKW9_9FIRM Putative uncharacterized protein Length = 370 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/350 (53%), Positives = 240/350 (68%), Gaps = 5/350 (1%) Query: 1 MQVITGKVQKAKKVVIYGPEGVGKSSLAAQFPRPIFIDTEGSTTEMDVARLPKPSSWEML 60 M + G+++ AKKVVIYGPEG+GKS+ A+QFP P+FIDTEGST EMDVAR KP+SWE+L Sbjct: 12 MNITKGRIETAKKVVIYGPEGIGKSTFASQFPDPLFIDTEGSTKEMDVARFDKPTSWELL 71 Query: 61 KQQVKWVWQGGQYGTLIIDTIDWAEMLCVESVCSTHQKNGIEDFGYGKGYIFVSEELGRM 120 K Q+++V TLIIDTIDWAE LC++S+C + K GIEDFGYG GY++ EE GR Sbjct: 72 KSQIEYVKLNKPCATLIIDTIDWAEQLCIKSICDKYDKKGIEDFGYGNGYVYEKEEFGRF 131 Query: 121 LNLLSDVVDAGIHVVLIAHAQIVKFEQPDEMGAYDRYQLKLGQKTASRTAPLVKEWADMV 180 LNLL DV++AG++VVL AHA + KFEQPDE+G+YDR++LKLG+KT + +PLVKEWADMV Sbjct: 132 LNLLEDVIEAGVNVVLTAHAILRKFEQPDELGSYDRWELKLGKKTTNLISPLVKEWADMV 191 Query: 181 LFINYKTFSIATDKEGKKNKAQGGVRTVYATHHPAWDAKTRHGLPDEFPLDYGHIAHIFN 240 LF NYKT S+A DK+GKK+KAQGG R +Y +HHP WDAK R+GLP+E P++YG I HI Sbjct: 192 LFANYKTISVAVDKDGKKHKAQGGRRIMYTSHHPCWDAKNRYGLPEEIPMEYGQIKHIIE 251 Query: 241 TPAPTTNXXXXXXXXXXXXXXXXXTVNQTGNIPNNIPAPVNTAPPTPSLNSNIPPALREL 300 T + + PAP T +S IP AL +L Sbjct: 252 RNVAAQPVATVQTAPVAKVAAAENATTATNDNVTSAPAPTITQE-----SSGIPKALADL 306 Query: 301 MTLHQVTESEIQQAVFQRNYYPVDTPIANYDPGFVEGVLVAAWSSVLGMI 350 MT + +TE +I+ AV + Y+P D PI +Y F+EGVL+ AW V MI Sbjct: 307 MTANSITEEQIRAAVASKGYFPADMPIKDYPKEFIEGVLIGAWEQVKAMI 356 >A6BEU1.1 A6BEU1_9FIRM Putative uncharacterized protein Length = 379 Score = 365 bits (936), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 192/385 (49%), Positives = 251/385 (65%), Gaps = 32/385 (8%) Query: 1 MQVITGKVQKAKKVVIYGPEGVGKSSLAAQFPRPIFIDTEGSTTEMDVARLPKPSSWEML 60 M++ GK+QKAKKVVIYGPEG+GKS+ AA+FP +FIDTEGST +MDVARLP+P+SW ML Sbjct: 1 MEITRGKIQKAKKVVIYGPEGIGKSTFAARFPGAVFIDTEGSTNDMDVARLPRPTSWNML 60 Query: 61 KQQVKWV-WQGGQYGTLIIDTIDWAEMLCVESVCSTHQKNGIEDFGYGKGYIFVSEELGR 119 +++++ + TL+IDT+DWAE+LCVE +C+ H K GIEDFGYG GY++ EE GR Sbjct: 61 FDEIEYIKTHTDECRTLVIDTVDWAELLCVEHICAVHNKKGIEDFGYGNGYVYTKEEFGR 120 Query: 120 MLNLLSDVVDAGIHVVLIAHAQIVKFEQPDEMGAYDRYQLKLGQKTASRTAPLVKEWADM 179 LN LSD+++ GI+VVL AHAQ+ KFEQPDE+GAYDR++LKLG+KT S+T+PLVKEWADM Sbjct: 121 FLNKLSDLIEVGINVVLTAHAQLRKFEQPDELGAYDRWELKLGKKTQSQTSPLVKEWADM 180 Query: 180 VLFINYKTFSIATDKEGKKNKAQGGVRTVYATHHPAWDAKTRHGLPDEFPLDYGHIAHIF 239 +LF NYKTFS+A K+GKK+K QGG RT+Y HHP WDAK R GLP+E DY IA I Sbjct: 181 LLFANYKTFSVAVGKDGKKHKGQGGKRTMYTQHHPCWDAKNRFGLPEECEFDYSVIAEII 240 Query: 240 -----NTPAPTTNXXXXXXXXXXXXXXXXXTVNQTGNIPNNIPAPVN------TAPPTPS 288 + PAP N NIP + V+ P S Sbjct: 241 EGTKKSVPAPKEEKPIEIQKPSVKD-------NDFMNIPKDTDEKVDFDTGAKVEEPVKS 293 Query: 289 LNSN-----------IPPALRELMTLHQVTESEIQQAVFQRNYYPVDTPIANYDPGFVEG 337 + IP ALR+LM + V+E E+ +AV+QR ++P TP N F++G Sbjct: 294 TGTKVEDSVFHIAEYIPKALRDLMYPNLVSEEELMEAVYQRGFFPKGTPFQNLPQEFIDG 353 Query: 338 VLVAAWSSVLGMIQNNRK--AVPFN 360 L+ AW VL +I+ R +PF+ Sbjct: 354 CLIGAWPQVLDVIKTMRSHYDIPFD 378 >Q9A0Q7.1 Q9A0Q7_STRP1 Putative uncharacterized protein Length = 363 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 182/363 (50%), Positives = 235/363 (64%), Gaps = 9/363 (2%) Query: 1 MQVITGKVQKAKKVVIYGPEGVGKSSLAAQFPRPIFIDTEGSTTEMDVARLPKPSSWEML 60 MQ+ GK +A++V+IYGPEG+GKSS AA FP P+FIDTEGST MDVAR+ KP+S+ ML Sbjct: 1 MQITRGKRARAQRVIIYGPEGIGKSSFAANFPEPLFIDTEGSTDNMDVARMDKPTSYTML 60 Query: 61 KQQVKWVWQGGQYG-TLIIDTIDWAEMLCVESVCSTHQKNGIEDFGYGKGYIFVSEELGR 119 K Q+ W+ TL+IDTIDWAE L V+ VC+ H K GIEDFG+G GY + EE+GR Sbjct: 61 KNQIAWIKANPTCCKTLVIDTIDWAESLIVDDVCAQHGKKGIEDFGWGNGYTYTKEEVGR 120 Query: 120 MLNLLSDVVDAGIHVVLIAHAQIVKFEQPDEMGAYDRYQLKLGQKTASRTAPLVKEWADM 179 LN+L ++++ GI++VL AHAQ+ KFEQPDEMGAYDR++LKLG+KT+S+TAPLVKEWADM Sbjct: 121 FLNMLQELIELGINIVLTAHAQMRKFEQPDEMGAYDRWELKLGKKTSSQTAPLVKEWADM 180 Query: 180 VLFINYKTFSIATDKEGKKNKAQGGVRTVYATHHPAWDAKTRHGLPDEFPLDYGHIAHIF 239 VLF NYKT + + E KK KA GG R +Y HHPAWDAK RHGLPDE PLDY IAH+F Sbjct: 181 VLFANYKTVVMTS--ESKKKKATGGQRVLYTQHHPAWDAKNRHGLPDEMPLDYAVIAHLF 238 Query: 240 NTPAPTTNXXXXXXXXXXXXXXXXXTVN-QTGNIPNNIPAPVNTAPPTPSLNSNIPPALR 298 +V+ Q P P +AP + ++P AL Sbjct: 239 AQVPTQPVPQTPPVQETPASQTAHESVHEQAEKAPEQPPMQPTSAP--VAYPPSMPKALT 296 Query: 299 ELMTLHQVTESEIQQAVFQRNYYPVDTPIANYDPGFVEGVLVAAWSSVLGMIQNNRKAV- 357 +LM+ QVT E+ R ++P TPI N+ P ++VA W + L +I+ + V Sbjct: 297 DLMSAEQVTPDELVAVANIRGHFPPMTPIENF-PSDYWNMIVANWLATLEVIKTQVRTVE 355 Query: 358 -PF 359 PF Sbjct: 356 PPF 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,255,479,088 Number of extensions: 93764447 Number of successful extensions: 321475 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 321426 Number of HSP's successfully gapped: 25 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)