BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0101.0020.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KA41.1 B3KA41_9BACI Putative uncharacterized protein                118   2e-25

>B3KA41.1 B3KA41_9BACI Putative uncharacterized protein
          Length = 122

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 77/118 (65%)

Query: 1   VYYIKDAKIRRMTEFDGAPCAEVGVLPGAVGDSALLVYIVEDQREEGYEIVRILTNDADT 60
           +Y I+DAKIRR+TE +GAPCAEV V P A G+SALL Y+       GYE+V+I+ ++A  
Sbjct: 2   MYAIRDAKIRRITEVNGAPCAEVEVYPAAEGESALLAYLTPSSPLGGYELVKIVRSNASM 61

Query: 61  ATDWFDNNLHDAFQDVTVSAFTGSAIMTPEDERSKFQQELLIFGDLKKQLEAHFHKLP 118
             DWFDN++HDAF D T  AF  +   T E++R  F+Q+LL  G L +QL     + P
Sbjct: 62  EVDWFDNSMHDAFVDATDEAFENNVQSTAEEDRDAFKQQLLSTGQLYEQLNQRLSEGP 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 705,539,305
Number of extensions: 26416901
Number of successful extensions: 68159
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 68159
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)