BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0014.p (418 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q185A1.1 Q185A1_CLOD6 Putative ABC transporter, permease permease 238 8e-61 C0C4D8.1 C0C4D8_9CLOT Putative uncharacterized protein 234 1e-59 B0NKF3.1 B0NKF3_EUBSP Putative uncharacterized protein 224 1e-56 A5KPQ9.1 A5KPQ9_9FIRM Putative uncharacterized protein 209 5e-52 Q03BV6.1 Q03BV6_LACC3 Putative uncharacterized protein 116 4e-24 >Q185A1.1 Q185A1_CLOD6 Putative ABC transporter, permease permease Length = 429 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 145/432 (33%), Positives = 226/432 (52%), Gaps = 27/432 (6%) Query: 1 MKLFLTECRQTSKSMIYFVFIGVMLLFYFTQLSDFAGSDIAEMQNPSGYNSQNPLMKPPP 60 M LF+ EC+ KSM+Y++FI V++ FY +QL +D+++ P N NPL+ P Sbjct: 1 MNLFIKECKNILKSMVYYIFIVVLVFFYISQLGSSVSNDVSK-NIP---NDGNPLV-APQ 55 Query: 61 DADN------------YGSREAEIPEQVMPAALNQLLSEYANNQYTTYPVGFYKNVKLSQ 108 +N YG +E+ E+V+P A L+ EY N YTTYP G K +KL Q Sbjct: 56 KVENIEEYYSVHNQYPYGQKESMKTEKVIPNATINLIREYQKNTYTTYPTGVVKYIKLDQ 115 Query: 109 KQQEKVAAIVKDITGQRPEDL--MNKQDKFPILITY-----ESFKVKMAELDTLLGGGSK 161 + + + +++ITG+ ++ + K D+ I I Y E F+ M +D +LGGGS Sbjct: 116 NKTKTIEKYIEEITGKSISEINSLWKTDE-SIKIDYSKVSLERFEEIMQRVDDILGGGSA 174 Query: 162 YEESRLQEYGNTPVTYEEKLAEYHNFIQVDQVTGAYARLFCDYMGIVISLFSVFVPVAFL 221 Y +LQ +G PVTY+E + Y+ IQ D+V+ YAR+FCDY+GIV+S+F VFV V Sbjct: 175 YAFDKLQRFGVVPVTYDEAMKNYNYTIQKDKVSNGYARIFCDYIGIVLSIFPVFVAVFMS 234 Query: 222 IRDRKAGVKELLYSRKYSSAGFILARYFXXXXXXXXXXXXXXXXXXXXXXXYGSRHHITV 281 ++D+++ ++E++YS++ SS +L+RYF + I++ Sbjct: 235 LKDKRSRMREIIYSKQVSSCKIVLSRYFALVFMMILPVLILGMKDLLPLIFFAKDKGISI 294 Query: 282 DLWAFAKYILAWLLPXXXXXXXXXXXXXXXXXXPIAIAVQLFWSYTDLLXXXXXXXXXXX 341 D AF KY L W+LP P+AI VQL W + Sbjct: 295 DNLAFIKYTLWWILPTLMIVTAVGMSITILTDTPVAIIVQLIWWLYSI--NSTGLKGDYS 352 Query: 342 XTQLAIRHNTLDNLQAMLDGLPALILNRSLYVLFSLLLVGITIVLYELKRRGKLDVYGHF 401 L IRHN++ N ++ +++NR + L +L+LV + I LYE KRRG LDV+ F Sbjct: 353 TMGLMIRHNSVLNGDIIIQNFNQIMINRIVISLGALVLVLLAIFLYEQKRRGNLDVWAKF 412 Query: 402 HQIFRNRKSPIK 413 ++F + K ++ Sbjct: 413 SKLFSSNKRKLQ 424 >C0C4D8.1 C0C4D8_9CLOT Putative uncharacterized protein Length = 412 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/428 (33%), Positives = 210/428 (49%), Gaps = 36/428 (8%) Query: 3 LFLTECRQTSKSMIYFVFIGVMLLFYFTQLSDFAGSDIAEMQNPSGYNSQNPLMKPPPDA 62 LF ECRQT +S+IY++ + V+ LF+F+QL + E+ KP Sbjct: 5 LFAKECRQTVRSLIYWLTVIVLTLFFFSQLGEL------EITG-----------KPAKGQ 47 Query: 63 DNYGSREAEIPEQVMPAALNQLLSEYANNQYTTYPVGFYKNVKLSQKQQEKVAAIVKDIT 122 + YG + ++ + +M L L EY Y+TYP+GF+K+VK S+++ +++ IVK+ T Sbjct: 48 EEYGMKYSDDKQVIMKNTLGSLAEEYYGGTYSTYPIGFHKSVKPSKEENKRIGDIVKETT 107 Query: 123 GQRP----EDLM----NKQDKF-------PIL-ITYESFKVKMAELDTLLGGGSKYEESR 166 G EDLM N D P+ ++YE F+ M E+D +LGGGS Y Sbjct: 108 GITDMTVIEDLMAEHYNTGDVIMTGLSVPPVKGLSYERFQKLMQEVDDMLGGGSSYGAEM 167 Query: 167 LQEYGNTPVTYEEKLAEYHNFIQVDQVTGAYARLFCDYMGIVISLFSVFVPVAFLIRDRK 226 L+ P+TYE+ + EY+ ++ D +TG YARLFCDYMGI++S+ VF+ V +RDR+ Sbjct: 168 LESNAMEPMTYEDAMEEYNTLVEKDHLTGGYARLFCDYMGIMLSILPVFLAVTRGLRDRR 227 Query: 227 AGVKELLYSRKYSSAGFILARYFXXXXXXXXXXXXXXXXXXXXXXXYGSRHHITVDLWAF 286 A ++EL+ RK SSA I +RY Y + I++D +AF Sbjct: 228 AQMQELIAVRKASSAVIIASRYAAMLVMLMVPVLILSCFPLAECMSYAAEAGISIDHFAF 287 Query: 287 AKYILAWLLPXXXXXXXXXXXXXXXXXXPIAIAVQLFWSYTDLLXXXXXXXXXXXXTQLA 346 KY WLLP + + VQ W + + Sbjct: 288 VKYSFGWLLPSVMTAAAVGLVLTVLTDTALGVLVQGVWWFLSIFSSMSGMDGGKYGWSFV 347 Query: 347 IRHNTLDNLQAMLDGLPALILNRSLYVLFSLLLVGITIVLYELKRRGKLDVYGHFHQIFR 406 RHNT N D L NR+LY S++LV I +Y KRRGK+D++G +I Sbjct: 348 PRHNTAGNYAGFHDNFAQLAANRALYAAVSVVLVLAAIWIYAKKRRGKMDIHG---KISA 404 Query: 407 NRKSPIKA 414 NRK+ KA Sbjct: 405 NRKNKSKA 412 >B0NKF3.1 B0NKF3_EUBSP Putative uncharacterized protein Length = 412 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/429 (32%), Positives = 210/429 (48%), Gaps = 36/429 (8%) Query: 2 KLFLTECRQTSKSMIYFVFIGVMLLFYFTQLSDFAGSDIAEMQNPSGYNSQNPLMKPPPD 61 KLF+ EC QT+KS+ Y++ + +M+LF+ +Q+ +M+ P Sbjct: 4 KLFMKECSQTAKSLTYWLLVIIMVLFFASQMGQM------DMEKA-----------PEKG 46 Query: 62 ADNYGSREAEIPEQVMPAALNQLLSEYANNQYTTYPVGFYKNVKLSQKQQEKVAAIVKDI 121 ++YG + ++ +M A L L EYA +YTTYP+GF K+V L ++++ KV I+K+ Sbjct: 47 LEDYGVKPSKDKNIIMSATLGMLAGEYAEGRYTTYPIGFVKSVTLGKEEEAKVGEILKEA 106 Query: 122 TGQRPEDLMNKQDKF-----------PIL-----ITYESFKVKMAELDTLLGGGSKYEES 165 TG E++ K D+F P+L ++Y F+ M E+D +LGGGS Y Sbjct: 107 TGLDKEEIEEKIDEFYENSGGIITSRPVLEPLESLSYGRFEEIMQEVDDMLGGGSSYALD 166 Query: 166 RLQEYGNTPVTYEEKLAEYHNFIQVDQVTGAYARLFCDYMGIVISLFSVFVPVAFLIRDR 225 L + G+ P TYE+ + EY +Q D TG YARLF DYM I++ + VF+ V +RDR Sbjct: 167 SLGDNGSEPKTYEDAVKEYEELVQKDGYTGGYARLFSDYMVIILGILPVFLAVTRELRDR 226 Query: 226 KAGVKELLYSRKYSSAGFILARYFXXXXXXXXXXXXXXXXXXXXXXXYGSRHHITVDLWA 285 +A ++EL+Y R+ SS I +RY Y I+VD A Sbjct: 227 RANMQELIYVRRSSSMTIIASRYLSMVVMILIPVFALSIQPLASCVTYAKTAGISVDYLA 286 Query: 286 FAKYILAWLLPXXXXXXXXXXXXXXXXXXPIAIAVQLFWSYTDLLXXXXXXXXXXXXTQL 345 FAKYI WLLP +A+ VQ W + + L Sbjct: 287 FAKYIAGWLLPTVMVVTALGMLLTELTDTALAVLVQGAWWFVSIFMGAKTMDGGRYGWNL 346 Query: 346 AIRHNTLDNLQAMLDGLPALILNRSLYVLFSLLLVGITIVLYELKRRGKLDVYGHFHQIF 405 RHNT+ N +G L+ NR LY +++ V +T +Y KR+G++++ G +I Sbjct: 347 IPRHNTILNYSGYQEGFSQLLTNRILYASLAVIAVSVTAWIYSQKRKGRMNIRG---KIS 403 Query: 406 RNRKSPIKA 414 NRKS A Sbjct: 404 ANRKSQSNA 412 >A5KPQ9.1 A5KPQ9_9FIRM Putative uncharacterized protein Length = 464 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 213/459 (46%), Gaps = 56/459 (12%) Query: 3 LFLTECRQTSKSMIYFVFIGVMLL-----FYFTQLSDFAGSDIAEMQNPSGYNSQNPLMK 57 LF+ E ++ S IY +FIG++L FY + GS E+ SG + L K Sbjct: 2 LFIKELKKICFSFIYVLFIGLLLFSWHENFYGVTTKEITGSQGNEVSISSGLTGGSILEK 61 Query: 58 PPPDADNYGSREAEIPEQVMPAALNQLLSEYANNQYTTYPVGFYKNVKLSQKQQEKVAAI 117 P + ++YG + E+P+++M ++L+ EY N Y TYP +YK V L++ +Q+++ I Sbjct: 62 PEKNKESYGMKNKEVPDKIMCGGTDKLIMEYLANSYATYPFSYYKEVVLNENEQKEILNI 121 Query: 118 VKDITG-------------------------------------------QRPEDLMNKQD 134 +K+ITG ++P + + Sbjct: 122 IKEITGLNEQQINHLPDDYFPAVNGNVIHFGSNGTQSENGAFTFEMGNEEQPTENTDYTK 181 Query: 135 KFPILITYESFKVKMAELDTLLGGGSKYE-ESRLQEYGNTPVTYEEKLAEYHNFIQVDQV 193 +F ++YE F+ M + ++++G GS Y E+ LQ YG +TYEE + EY I D+V Sbjct: 182 QFVAQVSYEEFQELMKKAESIIGTGSNYSMENLLQYYGLAEMTYEEAMNEYEKTIYDDKV 241 Query: 194 TGAYARLFCDYMGIVISLFSVFVPVAFLIRDRKAGVKELLYSRKYSSAGFILARYFXXXX 253 + A+ARLFCDYM + L+ VF+ V F ++DR+ + EL+ ++ + I R+ Sbjct: 242 SAAFARLFCDYMTRDLGLYPVFLVVIFWLKDRRNRMNELIDCKQIGTTKLITIRFLAMLA 301 Query: 254 XXXXXXXXXXXXXXXXXXXYGSRHHITVDLWAFAKYILAWLLPXXXXXXXXXXXXXXXXX 313 + + I +D++AF KYI+ WLLP Sbjct: 302 AVLLPITILSFESLIPLIEFSAETGIAIDVFAFLKYIVWWLLPTAMIVTSSGMFLTILTS 361 Query: 314 XPIAIAVQLFWSYTDLLXXXXXXXXXXXXTQLAIRHNTLDNLQAMLDGLPALILNRSLYV 373 PIAI VQ W + D L IRHN L + + + LNR L+V Sbjct: 362 MPIAILVQFVWWFID--TSLTALSGDTKIFTLMIRHNLLRGSELIKQDFNLICLNRGLFV 419 Query: 374 LFSLLLVGITIVLYELKRRGKLDVYGHFHQ----IFRNR 408 + SL+L+ +++V+Y KR GKL+ Y F Q F++R Sbjct: 420 ILSLILIALSVVVYNKKRGGKLN-YDFFLQKHFGFFKDR 457 >Q03BV6.1 Q03BV6_LACC3 Putative uncharacterized protein Length = 382 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/404 (22%), Positives = 167/404 (41%), Gaps = 39/404 (9%) Query: 1 MKLFLTECRQTSKSMIYFVFIGVMLLFYFTQLSDFAGSDIAEMQNPSGYNSQNPLMKPPP 60 MKLF E ++ + S+ + ++ +++ F + ++A + P+ NS + + Sbjct: 1 MKLFWMEVKRQTTSLTFTIYTLLVMAFVLLNMWPMLARNVAAL--PTSTNSYDDI----- 53 Query: 61 DADNYGSREAEIPEQVMPAALNQLLSEYANNQYTTYPVGFYKNVKLSQKQQEKVAAIVKD 120 A ++ +R+ + QL +Y +N Y TYP+GF K V L + Q +V +++ Sbjct: 54 TATDFQTRKTN--------GVGQLRYDYQHNTYVTYPLGFAKTVTLPKADQARVRSLLTQ 105 Query: 121 ITGQRPEDLMNKQDKFPILITYESFKVKMAELDTLLGGGSKYEESRLQEYGNTPVTYEEK 180 + + K + ++D L+GG S Y +Q + + P+T E Sbjct: 106 ANQAETQATLVK---------------ALGQVDRLIGGQSAYSSQNIQGFASRPMTKAEA 150 Query: 181 LAEYHNFIQVDQVTGAYARLFCDYMGIVISLFSVFVPVAFLIRDRKAGVKELLYSRKYSS 240 +++ ++ D+++G +ARLF DY GIV+ + V +A+ DR++ L S+ S+ Sbjct: 151 RQDHNLILKKDRISGTFARLFADYAGIVMGILPTVVVIAYCYADRRSRATTSLQSKMTST 210 Query: 241 AGFILARYFXXXXXXXXXXXXXXXXXXXXXXXYGSRHHITVDLWAFAKYILAWLLPXXXX 300 + +RY + + I D AF K WLLP Sbjct: 211 WRLVGSRYLASLVTLLMPIFLMGIVLTIQIALHYQGYQI--DYLAFFKMTGLWLLPTVMV 268 Query: 301 XXXXXXXXXXXXXXPIAIAVQLFWSYTDLLXXXXXXXXXXXXTQLAIRHNTLDNLQAMLD 360 + VQ+ W + ++ L RHN+L N+ Sbjct: 269 SSAVGFLSDALFGNFLGFVVQIGWWLSTMMIGARQVAGNYGWL-LIPRHNSLHNVAYYEA 327 Query: 361 GLPALILNRSLYVLFSLLLVGITIVLYELKRRGKLDVYGHFHQI 404 LP L+ NR Y ++ + + +VL L+R GK FH I Sbjct: 328 HLPELLFNRLTYAALAIGFICLAVVLLNLQRGGK------FHAI 365 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,126,183,419 Number of extensions: 80416362 Number of successful extensions: 203010 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 202980 Number of HSP's successfully gapped: 11 Length of query: 418 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 280 Effective length of database: 1,760,596,133 Effective search space: 492966917240 Effective search space used: 492966917240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)