BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0013.p (188 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0C4D7.1 C0C4D7_9CLOT Putative uncharacterized protein 110 4e-23 Q184Z8.1 Q184Z8_CLOD6 Putative ABC transporter, permease protein 105 3e-21 B0NKF4.1 B0NKF4_EUBSP Putative uncharacterized protein 94 5e-18 B7Y3R1.1 B7Y3R1_RUMHA Putative uncharacterized protein 72 2e-11 A5KPR0.1 A5KPR0_9FIRM Putative uncharacterized protein 59 2e-07 >C0C4D7.1 C0C4D7_9CLOT Putative uncharacterized protein Length = 206 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 1/183 (0%) Query: 1 LLALALALGTPVLFGIQYLDSRASSFVLERFLTFTGIILCTPLFFPEQDNAVKELIGSKY 60 L+ AL +P++ G+ L++ ++ VLE ++ TGIIL TP+F PEQ+ +++L+ +KY Sbjct: 21 LVTAALLCLSPLVLGVSNLEAPDTAKVLEMYVALTGIILLTPVFLPEQNKDLRDLVYAKY 80 Query: 61 TPFTGVLLIRXXXXXXXXXXXVSSFIGVMLLNHCQFAAGPFILGTFATALFLGSLGFLAY 120 + V +R + ++ ++ N+C+ + GT A LFLG LG L Y Sbjct: 81 MRASSVYAVRIAEAILAMGIFLGVYVWMLCYNNCEMDVLRYYGGTLAEMLFLGGLGVLCY 140 Query: 121 SLSDNLVAGYMLPTVYYILNMFSGEK-LGNFYLFSLSKESMNEKYWXXXXXXXXXXXXTA 179 L+DNLV GYM+P YYI+ M SG K L Y FS++ S EK + TA Sbjct: 141 GLADNLVIGYMVPVFYYIVAMGSGAKYLKMLYPFSMAAGSYEEKIYLLIAGIVMIAAGTA 200 Query: 180 YRA 182 R+ Sbjct: 201 LRS 203 >Q184Z8.1 Q184Z8_CLOD6 Putative ABC transporter, permease protein Length = 184 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%) Query: 11 PVLFGIQYLDSRASSFVLERFLTFTGIILCTPLFFPEQDNAVKELIGSKYTPFTGVLLIR 70 P++ G+ LD +++ LE ++ GI++ P+F EQ + E++ SK V LIR Sbjct: 6 PLIQGVANLDRISTAICLENYVAIIGIVMLVPVFSLEQSKEIDEIVSSKALSQVIVQLIR 65 Query: 71 XXXXXXXXXXXVSSFIGVMLLNHCQFAAGPFILGTFATALFLGSLGFLAYSLSDNLVAGY 130 + F+ V++ C F +I+G+FA+A+F+GSLG +L +N + GY Sbjct: 66 ILMSIIGIVVLIIGFVNVLIYLGCNFPVVEYIIGSFASAMFIGSLGMFFSNLFNNTIIGY 125 Query: 131 MLPTVYYILNMFS-GEKLGNFYLFSLSKESMNEKYWXXXXXXXXXXXXTAYRAIVRQVR 188 M+ Y ILNM + G+ +G F++ S+S+ S +EKYW + + R++R Sbjct: 126 MISIGYLILNMMTKGKYVGKFFIMSMSQGSFDEKYWLILGSVVLIIASLLIKPVKRKIR 184 >B0NKF4.1 B0NKF4_EUBSP Putative uncharacterized protein Length = 194 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 10 TPVLFGIQYLDSRASSFVLERFLTFTGIILCTPLFFPEQDNAVKELIGSKYTPFTGVLLI 69 +P++ G L R ++ VLE F+ GII+ +F PEQ+ ++ELI SKYT V I Sbjct: 18 SPLVLGTSNLGERDTAKVLEMFVALIGIIMIPSVFLPEQNRDIRELIRSKYTGCGIVYGI 77 Query: 70 RXXXXXXXXXXXVSSFIGVMLLNHCQFAAGPFILGTFATALFLGSLGFLAYSLSDNLVAG 129 R + ++ ++ +C F + GT A LFLG LG Y LSDNLV G Sbjct: 78 RLMTSVLILAALLGIYVWILARGNCSFPVAGYYCGTLAEMLFLGGLGLFFYGLSDNLVIG 137 Query: 130 YMLPTVYYILNMFSGEK-LGNFYLFSLSKESMNEKYW 165 YM+P YYI+ + SG+K L FY FS+ K S +EKY+ Sbjct: 138 YMIPFFYYIVAIGSGDKYLRMFYPFSMQKGSYDEKYY 174 >B7Y3R1.1 B7Y3R1_RUMHA Putative uncharacterized protein Length = 142 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Query: 53 KELIGSKYTPFTGVLLIRXXXXXXXXXXXVSSFIGVMLLNHCQFAAGPFILGTFATALFL 112 K+L+ SKY P + IR + ++ V+ +C+FA +G AT +FL Sbjct: 9 KDLLSSKYMPMAKLYGIRMTQAIIYLMLLLGIYMCVLKAGNCEFAFLKLYMGELATIVFL 68 Query: 113 GSLGFLAYSLSDNLVAGYMLPTVYYILNM-FSGEKLGNFYLFSLSKESMNEKY 164 G +G Y+L+D +V GYM+P +YY+LN+ S K+ FYLFS+S K+ Sbjct: 69 GGMGIFFYALTDQVVVGYMIPLLYYMLNIAISPNKIKVFYLFSMSMGKYEWKW 121 >A5KPR0.1 A5KPR0_9FIRM Putative uncharacterized protein Length = 216 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%) Query: 1 LLALALALGTPVLFGIQYLDSRASSFVLERFLTFTGIILCTPLFFPEQDNAVKELIGSKY 60 LLA PV+ GI LD+ S+ V + L G+ L P+ E + +VKE++ +K Sbjct: 25 LLAAVYTFIIPVIRGISNLDNIHSADVFGQSLALIGVFLFIPIIRQELEVSVKEIVYTKV 84 Query: 61 TPFTGVLLIRXXXXXXXXXXXVSSFIGVMLLNHCQFAAGPFILGTFATALFLGSLGFLAY 120 + + IR ++ F +M L +C F ++ T A+FLG LG L Sbjct: 85 WSYRKSVSIRLICSFWMITVMITIFASIMRLQNCSFPFLKYVTVTILYAVFLGILGLLFS 144 Query: 121 SLSDNLVAGYMLPTVYY 137 L +N++ GY+ Y+ Sbjct: 145 QLGNNVIIGYLASLGYW 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 906,450,469 Number of extensions: 33166957 Number of successful extensions: 89114 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 89114 Number of HSP's successfully gapped: 7 Length of query: 188 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 60 Effective length of database: 1,854,806,283 Effective search space: 111288376980 Effective search space used: 111288376980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)