BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0011.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W7B7.1 C2W7B7_BACCE Putative uncharacterized protein 459 e-127 C3FJA5.1 C3FJA5_BACTB Putative uncharacterized protein 457 e-127 C3D0S7.1 C3D0S7_BACTU Putative uncharacterized protein 457 e-127 C3CHX4.1 C3CHX4_BACTU Putative uncharacterized protein 457 e-127 C3B2S1.1 C3B2S1_BACMY Putative uncharacterized protein 456 e-126 >C2W7B7.1 C2W7B7_BACCE Putative uncharacterized protein Length = 322 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/287 (75%), Positives = 262/287 (91%) Query: 31 PQQRVGVVERLGKFHRLLTPGLNVLIPIIDQVRTYHDLRIQQANVPPQTVITKDNVQVQI 90 PQQRVGVVER GKF R++ PGLN++IPI+D++R YHDLRIQQ NVPPQ VITKDNVQV+I Sbjct: 26 PQQRVGVVERFGKFQRIMQPGLNIIIPIVDRIRVYHDLRIQQTNVPPQKVITKDNVQVEI 85 Query: 91 DTIIFYQVVGPEEATYGISDYVYGVRNISTATMRQIIGKLELDETLSGREKISSDIRLAL 150 DTIIFYQVV PE ATYGIS+Y YGVRNI++ATMRQIIGK+ELDETLSGREKIS++IRLAL Sbjct: 86 DTIIFYQVVEPELATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEIRLAL 145 Query: 151 DEATEKWGVRIERVEVIDIKPPLDIQEAMDKQMKAERSKRAIVLEAEAAKQDMILRAEGD 210 DEATEKWGVRIERVEV+DI PP D+Q +M+KQMKAER+KRAI+LEAEAAKQD +LRAEG+ Sbjct: 146 DEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLRAEGE 205 Query: 211 KQSKILKAEGDKEARIRQAEGLRQAQELEALGQAKAIQAVAEAEKSRIELIGSAGLDERV 270 KQSKIL AEGDKEARIR+AEG+R+A+ELEA G+A+AI+ +A+AE++RIELI +A LDERV Sbjct: 206 KQSKILMAEGDKEARIREAEGIREAKELEAQGEARAIETIAKAEQNRIELIRAADLDERV 265 Query: 271 LAYQSFDALTEISKGAANKVFLPTSAVETLGTLGAMAEVFKASKESK 317 LAY+SF++L E++KG ANKVF+P++A+ETLGTLGA+ E+FK + K Sbjct: 266 LAYKSFESLAEVAKGPANKVFIPSNAIETLGTLGAIGEIFKEKQAKK 312 >C3FJA5.1 C3FJA5_BACTB Putative uncharacterized protein Length = 322 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/287 (74%), Positives = 261/287 (90%) Query: 31 PQQRVGVVERLGKFHRLLTPGLNVLIPIIDQVRTYHDLRIQQANVPPQTVITKDNVQVQI 90 PQQ+VGVVER GKF R++ PGLN+LIPI+D+VR YHDLRIQQ NVPPQ VITKDNVQV+I Sbjct: 26 PQQKVGVVERFGKFQRIMHPGLNILIPIVDRVRVYHDLRIQQTNVPPQKVITKDNVQVEI 85 Query: 91 DTIIFYQVVGPEEATYGISDYVYGVRNISTATMRQIIGKLELDETLSGREKISSDIRLAL 150 DTIIFYQ+V PE ATYGIS+Y YGVRNI++ATMRQIIGK+ELDETLSGREKIS++IRLAL Sbjct: 86 DTIIFYQIVEPELATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEIRLAL 145 Query: 151 DEATEKWGVRIERVEVIDIKPPLDIQEAMDKQMKAERSKRAIVLEAEAAKQDMILRAEGD 210 DEATEKWGVRIERVEV+DI PP D+Q +M+KQMKAER+KRAI+LEAEAAKQD +LRAEG+ Sbjct: 146 DEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLRAEGE 205 Query: 211 KQSKILKAEGDKEARIRQAEGLRQAQELEALGQAKAIQAVAEAEKSRIELIGSAGLDERV 270 KQSKIL AEGDKEARIR+AEGL++A+ELEA G+A+AI+ +A+AE++RIEL+ A LDER+ Sbjct: 206 KQSKILMAEGDKEARIREAEGLKEAKELEAQGEARAIEEIAKAEQNRIELLREANLDERI 265 Query: 271 LAYQSFDALTEISKGAANKVFLPTSAVETLGTLGAMAEVFKASKESK 317 LAY+SF++L E++KG ANKVF+P++A+ETLGTLGA+ E+FK + K Sbjct: 266 LAYKSFESLAEVAKGPANKVFIPSNAIETLGTLGAIGEIFKEKQAKK 312 >C3D0S7.1 C3D0S7_BACTU Putative uncharacterized protein Length = 322 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/287 (74%), Positives = 261/287 (90%) Query: 31 PQQRVGVVERLGKFHRLLTPGLNVLIPIIDQVRTYHDLRIQQANVPPQTVITKDNVQVQI 90 PQQ+VGVVER GKF R++ PGLN+LIPI+D+VR YHDLRIQQ NVPPQ VITKDNVQV+I Sbjct: 26 PQQKVGVVERFGKFQRIMHPGLNILIPIVDRVRVYHDLRIQQTNVPPQKVITKDNVQVEI 85 Query: 91 DTIIFYQVVGPEEATYGISDYVYGVRNISTATMRQIIGKLELDETLSGREKISSDIRLAL 150 DTIIFYQ+V PE ATYGIS+Y YGVRNI++ATMRQIIGK+ELDETLSGREKIS++IRLAL Sbjct: 86 DTIIFYQIVEPELATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEIRLAL 145 Query: 151 DEATEKWGVRIERVEVIDIKPPLDIQEAMDKQMKAERSKRAIVLEAEAAKQDMILRAEGD 210 DEATEKWGVRIERVEV+DI PP D+Q +M+KQMKAER+KRAI+LEAEAAKQD +LRAEG+ Sbjct: 146 DEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLRAEGE 205 Query: 211 KQSKILKAEGDKEARIRQAEGLRQAQELEALGQAKAIQAVAEAEKSRIELIGSAGLDERV 270 KQSKIL AEGDKEARIR+AEGL++A+ELEA G+A+AI+ +A+AE++RIEL+ A LDER+ Sbjct: 206 KQSKILMAEGDKEARIREAEGLKEAKELEAQGEARAIEEIAKAEQNRIELLREANLDERI 265 Query: 271 LAYQSFDALTEISKGAANKVFLPTSAVETLGTLGAMAEVFKASKESK 317 LAY+SF++L E++KG ANKVF+P++A+ETLGTLGA+ E+FK + K Sbjct: 266 LAYKSFESLAEVAKGPANKVFIPSNAIETLGTLGAIGEIFKEKQAKK 312 >C3CHX4.1 C3CHX4_BACTU Putative uncharacterized protein Length = 322 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/287 (74%), Positives = 261/287 (90%) Query: 31 PQQRVGVVERLGKFHRLLTPGLNVLIPIIDQVRTYHDLRIQQANVPPQTVITKDNVQVQI 90 PQQ+VGVVER GKF R++ PGLN+LIPI+D+VR YHDLRIQQ NVPPQ VITKDNVQV+I Sbjct: 26 PQQKVGVVERFGKFQRIMHPGLNILIPIVDRVRVYHDLRIQQTNVPPQKVITKDNVQVEI 85 Query: 91 DTIIFYQVVGPEEATYGISDYVYGVRNISTATMRQIIGKLELDETLSGREKISSDIRLAL 150 DTIIFYQ+V PE ATYGIS+Y YGVRNI++ATMRQIIGK+ELDETLSGREKIS++IRLAL Sbjct: 86 DTIIFYQIVEPELATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEIRLAL 145 Query: 151 DEATEKWGVRIERVEVIDIKPPLDIQEAMDKQMKAERSKRAIVLEAEAAKQDMILRAEGD 210 DEATEKWGVRIERVEV+DI PP D+Q +M+KQMKAER+KRAI+LEAEAAKQD +LRAEG+ Sbjct: 146 DEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLRAEGE 205 Query: 211 KQSKILKAEGDKEARIRQAEGLRQAQELEALGQAKAIQAVAEAEKSRIELIGSAGLDERV 270 KQSKIL AEGDKEARIR+AEGL++A+ELEA G+A+AI+ +A+AE++RIEL+ A LDER+ Sbjct: 206 KQSKILMAEGDKEARIREAEGLKEAKELEAQGEARAIEEIAKAEQNRIELLREANLDERI 265 Query: 271 LAYQSFDALTEISKGAANKVFLPTSAVETLGTLGAMAEVFKASKESK 317 LAY+SF++L E++KG ANKVF+P++A+ETLGTLGA+ E+FK + K Sbjct: 266 LAYKSFESLAEVAKGPANKVFIPSNAIETLGTLGAIGEIFKEKQAKK 312 >C3B2S1.1 C3B2S1_BACMY Putative uncharacterized protein Length = 322 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/287 (74%), Positives = 262/287 (91%) Query: 31 PQQRVGVVERLGKFHRLLTPGLNVLIPIIDQVRTYHDLRIQQANVPPQTVITKDNVQVQI 90 PQQ+VGVVER GKF R++ PGLN++IPI+D++R YHDLRIQQ NVPPQ VITKDNVQV+I Sbjct: 26 PQQKVGVVERFGKFQRIMQPGLNLIIPIVDRIRVYHDLRIQQTNVPPQKVITKDNVQVEI 85 Query: 91 DTIIFYQVVGPEEATYGISDYVYGVRNISTATMRQIIGKLELDETLSGREKISSDIRLAL 150 DTIIFYQ+V PE ATYGIS+Y YGVRNI++ATMRQIIGK+ELDETLSGREKIS++IRLAL Sbjct: 86 DTIIFYQIVEPELATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEIRLAL 145 Query: 151 DEATEKWGVRIERVEVIDIKPPLDIQEAMDKQMKAERSKRAIVLEAEAAKQDMILRAEGD 210 DEATEKWGVRIERVEV+DI PP D+Q +M+KQMKAER+KRAI+LEAEAAKQD +LRAEG+ Sbjct: 146 DEATEKWGVRIERVEVVDINPPKDVQVSMEKQMKAERNKRAIILEAEAAKQDKVLRAEGE 205 Query: 211 KQSKILKAEGDKEARIRQAEGLRQAQELEALGQAKAIQAVAEAEKSRIELIGSAGLDERV 270 KQSKIL AEGDKEARIR+AEG+R+A+ELEA G+A+AI+ +A+AE++RIELI +A LDERV Sbjct: 206 KQSKILMAEGDKEARIREAEGIREAKELEAQGEARAIETIAKAEQNRIELIRAADLDERV 265 Query: 271 LAYQSFDALTEISKGAANKVFLPTSAVETLGTLGAMAEVFKASKESK 317 LAY+SF++L E++KG ANKVF+P++A+ETLGTLGA+ E+FK + K Sbjct: 266 LAYKSFESLAEVAKGPANKVFIPSNAIETLGTLGAIGEIFKEKQAKK 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,494,937,361 Number of extensions: 54666178 Number of successful extensions: 220236 Number of sequences better than 1.0e-05: 2998 Number of HSP's gapped: 213788 Number of HSP's successfully gapped: 3002 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)