BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0008.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8R7I9.1 Q8R7I9_THETN Transcriptional regulator 142 3e-32 Q67RV6.1 Q67RV6_SYMTH Putative glucose kinase 123 2e-26 A3TKA6.1 A3TKA6_9MICO Putative sugar kinase 105 6e-21 B1B778.1 B1B778_CLOBO N-acetylmannosamine kinase 99 4e-19 A9KIQ9.1 A9KIQ9_CLOPH ROK family protein 98 1e-18 >Q8R7I9.1 Q8R7I9_THETN Transcriptional regulator Length = 296 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 144/298 (48%), Gaps = 6/298 (2%) Query: 3 QVIGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVCPLVQA 62 +VIGVDIGGT + G +IDE G + E T A GRE IL L + +L++ V+ Sbjct: 2 KVIGVDIGGTKILGGLIDERGNLLEETLVYTKAHLGREKILENLFIAIDKLID--KDVKG 59 Query: 63 IGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXX 122 IGI SAGR+N G V YATDNL GW G +L + Sbjct: 60 IGIGSAGRINFKEGIVEYATDNLPGWTGCNLKQLLEDRYKIPVIADNDVNAAVIGEIWQG 119 Query: 123 XXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQ 182 RG++D A + +G + RG W+ GE GH +L P G CNCG++GC+EQ Sbjct: 120 AGRGYKDIVMIAIGTGVGGAIVYNGEVIRGGSWSAGEIGHMILYPKGRQCNCGQRGCLEQ 179 Query: 183 YVSGSAXXXXXXXXXXXXYGHGS-ELMADARAGDSGALQVLERFAADLAVVLGNISVTFD 241 YVSG+A G+ E+ A GD AL+++ F L++ + ++ D Sbjct: 180 YVSGTAIARTYSEVSKEKKIAGAEEVFLLAEKGDKMALEIVNDFVNSLSIAILSLKNLLD 239 Query: 242 PARIIIGGGVIHEREIWWPLLKNKLQDXXXXXXXXXXXXXNRAGCFGAAKLALERFGQ 299 P IIGGGVI + +WW LK L++ N+A GAAKL ++ + Sbjct: 240 PEIFIIGGGVIGAKRVWWDKLKKTLEN---RASITPAQLENKATMVGAAKLIIDYLSK 294 >Q67RV6.1 Q67RV6_SYMTH Putative glucose kinase Length = 308 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 131/303 (43%), Gaps = 12/303 (3%) Query: 5 IGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVC-PLVQAI 63 +G+DIGGT +K ++D G + A T A +G +A+L ++ L L+E V+A Sbjct: 4 LGIDIGGTGIKAAIVDGQGIILHRAEVPTGAAEGADAVLQRVRRLGLTLVERAGQPVEAC 63 Query: 64 GIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXXX 123 G+ S GR++ G V++A+ NL GW G L Sbjct: 64 GVGSPGRIDHLRGHVIFASGNLPGWTGTALGAELHQTFGVPVVVDNDVNAAAVGEAWIGA 123 Query: 124 XRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQY 183 RG D A +HG L RG W GE GH L PGG PC CG +GC E+Y Sbjct: 124 ARGSSDFLMLTLGTGVGGALTVHGRLWRGARWGAGEVGHMALYPGGDPCPCGGRGCAERY 183 Query: 184 VSGSAXXXXXXXXXXXXYGHG--SELMADARAGD----SGALQVLERFAADLAVVLGNIS 237 VS A + +++ A GD A +E++ ADLA+ L N+ Sbjct: 184 VSSKALTRRANEGLVAGHPFRGVRDVIRTAEQGDGERQRAARLAVEQWTADLALFLMNLQ 243 Query: 238 VTFDPARIIIGGGVIHEREIWWPLL----KNKLQDXXXXXXXXXXXXXNRAGCFGAAKLA 293 + FDP I++GGG I WW L + ++ AG GAA+LA Sbjct: 244 MAFDPQMIVVGGG-ITRLGYWWDRLVQAAARECRERSMSIRIRRAKLGPMAGVVGAARLA 302 Query: 294 LER 296 + R Sbjct: 303 MLR 305 >A3TKA6.1 A3TKA6_9MICO Putative sugar kinase Length = 320 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 114/268 (42%), Gaps = 19/268 (7%) Query: 1 MRQVIGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAIL-GKLEALVRELLEVCPL 59 M IG+DIGGT V G V+DE G + A ARRDT R R ++ + +V EL P Sbjct: 1 MSLAIGIDIGGTKVAGGVVDENGEILARARRDTPHRSKRPQVVEDTIVDVVEELRAQHPG 60 Query: 60 VQAIGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXX 119 V+A+GI +AG V D VV+A W+ L + Sbjct: 61 VEAVGIGAAGFVAADRATVVFAPH--LSWRDEPLRDALSKRIDAPILVDNDANAACWAEW 118 Query: 120 XXXXXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGC 179 +G D A ++HG + RG GEFGH +VP G C CG +GC Sbjct: 119 RFGAAQGDSDVVMVNLGTGIGGAILMHGEVYRGRFGIAGEFGHMQVVPEGQRCECGNRGC 178 Query: 180 VEQYVSGSAXXXXXXXXXXXXYGHGSELMAD----------------ARAGDSGALQVLE 223 EQY SG+A ++L A AR GD+ ++++L Sbjct: 179 WEQYASGNALVREARAMILANSPVATDLAARVEGRADDLTGPIVTEAARDGDATSIELLA 238 Query: 224 RFAADLAVVLGNISVTFDPARIIIGGGV 251 L + + N++ FDP +IGGGV Sbjct: 239 EIGHWLGIGIANLAAAFDPGTFVIGGGV 266 >B1B778.1 B1B778_CLOBO N-acetylmannosamine kinase Length = 310 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 4/250 (1%) Query: 5 IGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVCPLVQAIG 64 +G+DIGGT +K V D+ G + DT A +G E ++ ++ ++ E+L+ ++ IG Sbjct: 4 LGIDIGGTRIKYGVADDKGEINEIYYSDTQAYKGAEQLIITIKKIINEILQ-NNFIKGIG 62 Query: 65 IASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124 I++AG+V++ TG++++AT+ + GW G+ L + Sbjct: 63 ISTAGQVDSHTGEIIFATETIPGWTGVKLKDIIQNTFNIPCCVDNDVNCACLGEMWKGNM 122 Query: 125 RGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQYV 184 H++ A +I L G ++ GE GH L G C CG GC E+Y Sbjct: 123 GEHKNVIFLTLGTGIGGAIIIDKKLYSGSNFIAGEIGHINLYKDGERCTCGANGCFERYA 182 Query: 185 SGSAXXXXXXXXXXXXYGH---GSELMADARAGDSGALQVLERFAADLAVVLGNISVTFD 241 S +A G ++ + A+ G+ + +++ ++ D+A+ L +I F+ Sbjct: 183 STAALIKRAKHRLNLDENFDLSGEDIFSKAKDGEEIYISIIDEWSYDIALGLKSIIYMFN 242 Query: 242 PARIIIGGGV 251 P+ +IIGGGV Sbjct: 243 PSLVIIGGGV 252 >A9KIQ9.1 A9KIQ9_CLOPH ROK family protein Length = 299 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 120/265 (45%), Gaps = 8/265 (3%) Query: 3 QVIGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVCPLVQA 62 ++I +DIGGTA+K D ++ + R ++A G + +L + +++ E+ Sbjct: 2 KIIALDIGGTAIKYAYFDGDDLIFDDVRP-SEASLGGDKVLENIISIITEIGNQHSY-DT 59 Query: 63 IGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXX 122 IGI++AG+V++ G +VYA DN+ + G+ L + Sbjct: 60 IGISTAGQVDSINGTIVYANDNIPNYTGMELKKILEDKFKVPVSVENDVNAAAIGEAIYG 119 Query: 123 XXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQ 182 +G D A ++ L +G E GH ++ PGGLPC CG GC EQ Sbjct: 120 AGKGENDFLCLTYGTGIGGAIFLNQKLYKGAQGVAAEMGHMMIHPGGLPCGCGSFGCYEQ 179 Query: 183 YVSGSAXXXXXXXXXXXXYGHGSELMADARAGDSGALQVLERFAADLAVVLGNISVTFDP 242 Y S +A Y +G + + A ++++++ +++ L N+ F+P Sbjct: 180 YASTTALIRTAKAHSPEFY-NGKAIFSAFDHDSKDAKRLIDQWVKEISYGLVNLIYIFNP 238 Query: 243 ARIIIGGGVIHEREIWWPLLKNKLQ 267 + I++GGG++ + P + NKL Sbjct: 239 SLIVLGGGIMTQ-----PYIINKLN 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,507,281,841 Number of extensions: 51709975 Number of successful extensions: 132267 Number of sequences better than 1.0e-05: 850 Number of HSP's gapped: 132497 Number of HSP's successfully gapped: 864 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)