BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0007.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJF9.1 C0ZJF9_BREBN Transcriptional regulator 257 8e-67 B7R6B2.1 B7R6B2_9THEO Transcriptional regulator, RpiR family pro... 242 2e-62 Q8R7I8.1 Q8R7I8_THETN Transcriptional regulator 236 1e-60 C1I8J6.1 C1I8J6_9CLOT Helix-turn-helix protein RpiR:Sugar isomerase 212 3e-53 B0PB47.1 B0PB47_9FIRM Putative uncharacterized protein 208 4e-52 >C0ZJF9.1 C0ZJF9_BREBN Transcriptional regulator Length = 297 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 134/274 (48%), Positives = 183/274 (66%), Gaps = 4/274 (1%) Query: 6 RINTYYPSMTKSEQKVAKCVLEHPDNLIYLSVTELADFAGTGETTVMRFCRKIGFKGYQD 65 I + PS TKSEQKVA VL+ D++IY SV +LA+ AG GETTV+RFCRKIGF GYQ+ Sbjct: 24 HIQSLLPSFTKSEQKVAHIVLQQTDSVIYSSVIDLAEKAGVGETTVLRFCRKIGFHGYQE 83 Query: 66 FKLMLAQGLPKQQAPSGRDGGDADDATLLYESMVNILQSSLG----MLDREQLEEAINQI 121 FKL LAQ L + G+ D ++ + Q ++G + EQLE ++ + Sbjct: 84 FKLALAQELVNPVKNLHGEVGEDDSLDIITHKVTATNQQAIGDTSALFQLEQLERCVDLL 143 Query: 122 DAAHHMQFFGVGSSAITALDAKNRLLRIGRRVEAIADSHIQSMMAVTMGEGDVAFGISVS 181 A+ + F+GVG+SA+TA DAK LRIG RV+A +SH+Q+M A T+G GDVA G+SVS Sbjct: 144 QKANTIHFYGVGTSAVTAQDAKYTFLRIGLRVDAFNESHLQAMAAATLGPGDVAIGLSVS 203 Query: 182 GSTLDTNDMLMKAKQNGAKVIAMTNYAKSPIASIADIVLLTAGKESPLEGGSMGAKISQL 241 GST DT D L AKQ GA I +T+Y +SPI ++ADI LLTA +E PL+GGS+ AKI+QL Sbjct: 204 GSTKDTIDSLKVAKQAGAACICLTHYRRSPITNVADITLLTAAQEGPLQGGSLAAKIAQL 263 Query: 242 FIIDLICKGLERRHADETKNMKELTARAVIDRIY 275 ++D+I + R+ ++ KE TA+AV++R Y Sbjct: 264 HVLDVISTTITMRNKEKALLYKERTAKAVLERKY 297 >B7R6B2.1 B7R6B2_9THEO Transcriptional regulator, RpiR family protein Length = 283 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 126/276 (45%), Positives = 191/276 (69%), Gaps = 8/276 (2%) Query: 6 RINTYYPSMTKSEQKVAKCVLEHPDNLIYLSVTELADFAGTGETTVMRFCRKIGFKGYQD 65 +I + Y S+T +E+KVA VLE+ +N+IYLS+TELA+ GTGETT++RFCR+IG G+Q+ Sbjct: 10 KIRSIYNSLTNAEKKVADYVLENAENVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQE 69 Query: 66 FKLMLAQGLPKQQAPSGRDGGDADDATLLYESMVN----ILQSSLGMLDREQLEEAINQI 121 FKL LA+ + + + + D +L + + + +++ +L +LE+A++ I Sbjct: 70 FKLNLAKEIAEPETSIHENISFNDTLDVLVQKITTENTMAISNTVKLLSLNELEKAVDAI 129 Query: 122 DAAHHMQFFGVGSSAITALDAKNRLLRIGRRVEAIADSHIQSMMAVTMGEGDVAFGISVS 181 A +QF+GVG+S TALDAK + +R+G V+A DSHIQ++ AV++ DVA GIS S Sbjct: 130 INARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDSHIQAISAVSLTNEDVAVGISFS 189 Query: 182 GSTLDTNDMLMKAKQNGAKVIAMTNYAKSPIASIADIVLLTAGKESPLEGGSMGAKISQL 241 GST DT + AK+ GAKVIA+TNYA+SPI S+ADIVLLT+ KE+PL G++ +KI+QL Sbjct: 190 GSTKDTVETCRLAKEAGAKVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSKIAQL 249 Query: 242 FIIDLICKGLERRHADETKNMKEL--TARAVIDRIY 275 I+D++ + R D K ++EL TA+AV++++Y Sbjct: 250 HILDILYTAVAVRLKD--KAVQELNKTAKAVLEKLY 283 >Q8R7I8.1 Q8R7I8_THETN Transcriptional regulator Length = 285 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 122/276 (44%), Positives = 192/276 (69%), Gaps = 8/276 (2%) Query: 6 RINTYYPSMTKSEQKVAKCVLEHPDNLIYLSVTELADFAGTGETTVMRFCRKIGFKGYQD 65 +I + Y S+T +E+KVA VLE+ +++IYLS+TELA+ GTGETT++RFCR+IG G+Q+ Sbjct: 12 KIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQE 71 Query: 66 FKLMLAQGLPKQQAPSGRDGGDADDATLLYESMVN----ILQSSLGMLDREQLEEAINQI 121 FKL LA+ + + + + D +L + + + +++ +L +LE+A++ I Sbjct: 72 FKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKAVDAI 131 Query: 122 DAAHHMQFFGVGSSAITALDAKNRLLRIGRRVEAIADSHIQSMMAVTMGEGDVAFGISVS 181 A +QF+GVG+S TALDAK + +R+G V+A D+HIQ++ AV++ + DVA GIS S Sbjct: 132 INARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLTDKDVAVGISFS 191 Query: 182 GSTLDTNDMLMKAKQNGAKVIAMTNYAKSPIASIADIVLLTAGKESPLEGGSMGAKISQL 241 GST DT + AK+ GA+VIA+TNYA+SPI S+ADIVLLT+ KE+PL G++ +KI+QL Sbjct: 192 GSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRSGALTSKIAQL 251 Query: 242 FIIDLICKGLERRHADETKNMKEL--TARAVIDRIY 275 I+D++ + + D K ++EL TA+AV++++Y Sbjct: 252 HILDILYTAVAVKLKD--KAVQELNKTAKAVLEKLY 285 >C1I8J6.1 C1I8J6_9CLOT Helix-turn-helix protein RpiR:Sugar isomerase Length = 266 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 170/267 (63%), Gaps = 5/267 (1%) Query: 7 INTYYPSMTKSEQKVAKCVLEHPDNLIYLSVTELADFAGTGETTVMRFCRKIGFKGYQDF 66 I + YPS++KSE+KVA +L+ N+IY ++ E++ GE T++RF RKIGF G+QD Sbjct: 2 IESCYPSLSKSERKVADYILQEKGNIIYETLLEISKKIKVGEATILRFVRKIGFSGFQDL 61 Query: 67 KLMLAQGLPKQQAPSGRDGGDADDATLLYESMVNILQSSLGMLDREQLEEAINQIDAAHH 126 KL +A+ + D+ A +M N +Q++ +LD QL AI I +++ Sbjct: 62 KLQIAKDDEPVNETYHENYIDSIAA-----NMTNTIQNTKNVLDSNQLRMAIEFIQSSNR 116 Query: 127 MQFFGVGSSAITALDAKNRLLRIGRRVEAIADSHIQSMMAVTMGEGDVAFGISVSGSTLD 186 + F+GVG+S + A +A++R +R+G+ +I DSH Q M + E DV +S+SG T D Sbjct: 117 LFFYGVGASGLAAYEAQSRFIRMGKTGLSITDSHFQLMYSSVCDENDVIIALSLSGYTKD 176 Query: 187 TNDMLMKAKQNGAKVIAMTNYAKSPIASIADIVLLTAGKESPLEGGSMGAKISQLFIIDL 246 + L AK+ AK+IA+TNYA SP+A IAD VLLTAGKE+ L+GGS+ +KISQL+IIDL Sbjct: 177 IIESLKVAKKQKAKIIAITNYALSPVAQIADCVLLTAGKENLLDGGSLISKISQLYIIDL 236 Query: 247 ICKGLERRHADETKNMKELTARAVIDR 273 +C G + + ++KE TA +ID+ Sbjct: 237 LCTGYALLNKESVLSLKEKTAELLIDK 263 >B0PB47.1 B0PB47_9FIRM Putative uncharacterized protein Length = 289 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 165/280 (58%), Gaps = 13/280 (4%) Query: 6 RINTYYPSMTKSEQKVAKCVLEHPDNLIYLSVTELADFAGTGETTVMRFCRKIGFKGYQD 65 RI + Y T+ E+KVA ++EHP +I++S+TEL+D G GET+V RFCR +G GYQ+ Sbjct: 13 RIRSVYNQFTRVEKKVADYIMEHPGEVIFMSITELSDACGVGETSVFRFCRTMGMGGYQE 72 Query: 66 FKLMLAQGLPKQQAPSGRDG------GDADDATLLYESMVNILQSSL----GMLDREQLE 115 FK+ + + Q G++ DD L + ++ Q +L +LD ++L+ Sbjct: 73 FKMRFSLSM---QTDVGKEDVLTGAITPWDDLNALVQKVLQTEQRALSETAALLDVKELD 129 Query: 116 EAINQIDAAHHMQFFGVGSSAITALDAKNRLLRIGRRVEAIADSHIQSMMAVTMGEGDVA 175 A++ + A + FFGVG+S AL ++ LRI +V + D+H Q+M+A TM DVA Sbjct: 130 RAVDYLSQARRIIFFGVGASFTAALKTSHKFLRIEPKVNCVNDAHTQAMLAATMSAEDVA 189 Query: 176 FGISVSGSTLDTNDMLMKAKQNGAKVIAMTNYAKSPIASIADIVLLTAGKESPLEGGSMG 235 S SGST DTN + AK+NGAKV+A+T + KSP+ D++LL E PL+ GS Sbjct: 190 VVFSYSGSTKDTNAVAELAKKNGAKVVAITRFQKSPLTEFTDVILLCGANEGPLQSGSAS 249 Query: 236 AKISQLFIIDLICKGLERRHADETKNMKELTARAVIDRIY 275 A ISQ F++DL+ RR+ D E TA +V++++Y Sbjct: 250 ADISQAFLVDLLYTEYYRRNMDRCGPNNEKTASSVLNKLY 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,469,442,372 Number of extensions: 56850478 Number of successful extensions: 166106 Number of sequences better than 1.0e-05: 2451 Number of HSP's gapped: 163826 Number of HSP's successfully gapped: 2451 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)