BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0006.p (239 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PD39.1 C1PD39_BACCO N-acylglucosamine-6-phosphate 2-epimerase ... 232 2e-59 B6FWE0.1 B6FWE0_9CLOT Putative uncharacterized protein 220 7e-56 B1V177.1 B1V177_CLOPE N-acetylmannosamine-6-phosphate epimerase 219 1e-55 Q185B2.1 NANE_CLOD6 Putative N-acetylmannosamine-6-phosphate 2-e... 219 2e-55 B1RFA7.1 B1RFA7_CLOPE N-acetylmannosamine-6-phosphate epimerase 218 5e-55 >C1PD39.1 C1PD39_BACCO N-acylglucosamine-6-phosphate 2-epimerase EC=5.1.3.9 Length = 222 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/221 (54%), Positives = 147/221 (66%) Query: 7 IIQKLHHGLIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLP 66 + K+ LIVSCQAL EPL+ GIRAN A D+RAIK+ LP Sbjct: 1 MFDKVKGKLIVSCQALEDEPLHSPFIMSKMALAAKEGGAAGIRANSAEDIRAIKAETGLP 60 Query: 67 VIGIVKRDYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNG 126 VIGIVKRDY GS VYITPT +EI+ELL DMIALDATG+KRP TL ++ +++ G Sbjct: 61 VIGIVKRDYEGSEVYITPTKKEIDELLAVKPDMIALDATGRKRPGGETLSGLIGYIHEAG 120 Query: 127 TASMGDISILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAE 186 M DIS EE + A LG CVSTTLSGYT YS +Q P+F LL+K V+ L+IPV AE Sbjct: 121 LPVMADISTEEEGLQAARLGADCVSTTLSGYTSYSPKQGEPDFALLKKLVDALTIPVFAE 180 Query: 187 GRMIEPDQVRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 G P +V+KA++ GA+A VVGSAITRPQLIT +FA A+R Sbjct: 181 GHFDTPAEVKKALEFGAFAVVVGSAITRPQLITKKFAEAMR 221 >B6FWE0.1 B6FWE0_9CLOT Putative uncharacterized protein Length = 221 Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 107/213 (50%), Positives = 141/213 (66%) Query: 15 LIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLPVIGIVKRD 74 LIVSCQALP EPL+ GIRA G D++ IK LPVIGI+KR+ Sbjct: 9 LIVSCQALPDEPLHSSFIMGRMANAAKEGGAAGIRAQGVEDIKEIKRVTGLPVIGIIKRN 68 Query: 75 YPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNGTASMGDIS 134 Y S +YITPT +EI+ELL G +MIALD T +KRP D L +++ ++ N M DIS Sbjct: 69 YDDSEIYITPTKKEIDELLTTGCEMIALDCTDRKRPGDENLAELIKYIKENNVLVMADIS 128 Query: 135 ILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAEGRMIEPDQ 194 EEA+ AE LGV CVSTTL+GYT YS+ + GP+FEL+ + V L +PV+AEG++ P+ Sbjct: 129 TYEEAMEAEKLGVDCVSTTLAGYTSYSVNKVGPDFELIDRLVSDLKVPVIAEGKINTPED 188 Query: 195 VRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 +++ ++AVVGSAITRPQLIT +FA AI+ Sbjct: 189 LKEVYAHNVFSAVVGSAITRPQLITAKFANAIK 221 >B1V177.1 B1V177_CLOPE N-acetylmannosamine-6-phosphate epimerase Length = 221 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/213 (50%), Positives = 142/213 (66%) Query: 15 LIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLPVIGIVKRD 74 LIVSCQAL EPL+ IRA G D+ IK LP+IGI+KR+ Sbjct: 9 LIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRN 68 Query: 75 YPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNGTASMGDIS 134 Y S +YITPT++E++ELL+ +MIALDAT +KRP ++ +V ++ G +M DIS Sbjct: 69 YDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADIS 128 Query: 135 ILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAEGRMIEPDQ 194 LEE I AE LG CVSTTLSGYTPYS Q +FELL++ V+++ IPV+ EGR+ P++ Sbjct: 129 TLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKKVKIPVICEGRINTPEE 188 Query: 195 VRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 ++KA+DLGAY+AVVG AITRPQ IT RF ++ Sbjct: 189 LKKALDLGAYSAVVGGAITRPQQITKRFTDILK 221 >Q185B2.1 NANE_CLOD6 Putative N-acetylmannosamine-6-phosphate 2-epimerase EC=5.1.3.9 Length = 223 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 146/220 (66%) Query: 7 IIQKLHHGLIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLP 66 ++ K+ LIVSCQAL EPL+ VGIRA G D+ IK LP Sbjct: 1 MLDKVKGRLIVSCQALENEPLHSPFIMGRMAKAAMEGGAVGIRAQGVEDIIEIKKVTGLP 60 Query: 67 VIGIVKRDYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNG 126 VIGI+KR+Y S +YITPT +E++ELL G +MIALDAT + RP + L++++ ++ NG Sbjct: 61 VIGIIKRNYEDSDIYITPTKKEVDELLTTGCEMIALDATNRVRPNNEDLKELIKYIKENG 120 Query: 127 TASMGDISILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAE 186 M DIS +EAI A+ GV CVSTTLSGYTPY+ EGP+F L+++ V+ L IPV+AE Sbjct: 121 VLVMADISNYDEAIKAQEYGVDCVSTTLSGYTPYTKTLEGPDFVLMERLVKDLEIPVIAE 180 Query: 187 GRMIEPDQVRKAMDLGAYAAVVGSAITRPQLITGRFAAAI 226 G++ P ++K +LG +++VVGSAITRPQLIT +F AI Sbjct: 181 GKVNTPQDLKKVFELGVHSSVVGSAITRPQLITEKFVKAI 220 >B1RFA7.1 B1RFA7_CLOPE N-acetylmannosamine-6-phosphate epimerase Length = 221 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 107/213 (50%), Positives = 141/213 (66%) Query: 15 LIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLPVIGIVKRD 74 LIVSCQAL EPL+ IRA G D+ IK LP+IGI+KR+ Sbjct: 9 LIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRN 68 Query: 75 YPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNGTASMGDIS 134 Y S +YITPT++E++ELL+ +MIALDAT +KRP ++ +V ++ G +M DIS Sbjct: 69 YDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADIS 128 Query: 135 ILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAEGRMIEPDQ 194 LEE I AE LG CVSTTLSGYTPYS Q +FELL++ V+ + IPV+ EGR+ P++ Sbjct: 129 TLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEE 188 Query: 195 VRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 ++KA+DLGAY+AVVG AITRPQ IT RF ++ Sbjct: 189 LKKALDLGAYSAVVGGAITRPQQITKRFTDILK 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,273,118,279 Number of extensions: 46180071 Number of successful extensions: 137299 Number of sequences better than 1.0e-05: 545 Number of HSP's gapped: 135833 Number of HSP's successfully gapped: 545 Length of query: 239 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 107 Effective length of database: 1,817,122,223 Effective search space: 194432077861 Effective search space used: 194432077861 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)