BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0004.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9KAF8.1 B9KAF8_THENN Sugar ABC transporter, permease protein 243 1e-62 A5IIX2.1 A5IIX2_THEP1 Binding-protein-dependent transport system... 242 3e-62 B7RBZ1.1 B7RBZ1_9THEM Permease protein of sugar ABC transporter 242 3e-62 C4FYW8.1 C4FYW8_ABIDE Putative uncharacterized protein 241 4e-62 A9BH29.1 A9BH29_PETMO Binding-protein-dependent transport system... 240 8e-62 >B9KAF8.1 B9KAF8_THENN Sugar ABC transporter, permease protein Length = 271 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/248 (46%), Positives = 164/248 (66%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W+ SL G NV+ PP + P I F NYV WK ++ Y NT+II LG N Sbjct: 23 PFYWITKTSLEAGGNVYKYPPNLFPHPITFSNYVGAWKTVNLGGYYLNTLIIAGLGTFLN 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L S + AYPLA FKG+ V L++ M+IP +IV+YLT++ + N++LGVVLP Sbjct: 83 VLFSLMVAYPLARIDFKGKQFVLFLVLLPMMIPVQNTLIVNYLTLRKLGMLNTYLGVVLP 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 AV++F IF+MRQ +L +P D+ ++DGA EL I+W+++ PL+KP IA + + +V+ + Sbjct: 143 QAVTIFGIFMMRQAYLNIPKSFEDAARIDGAGELYIWWRIITPLIKPDIATLVVFQVITW 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 W+NFLWP++VL D KYPLA AL YLN F NF + AAG ++S+ P+I++FL QRY + Sbjct: 203 WDNFLWPLIVLSDSNKYPLAVALVYLNSTFQVNFRYTAAGIVLSILPVIILFLVAQRYII 262 Query: 274 EGIAGAIK 281 IAG +K Sbjct: 263 NAIAGGVK 270 >A5IIX2.1 A5IIX2_THEP1 Binding-protein-dependent transport systems inner membrane component Length = 271 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 110/248 (44%), Positives = 164/248 (66%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W+ S G NV+ PP+++P F NYV WK + Y NT+II G + N Sbjct: 23 PFYWIAKTSFEAGGNVYKYPPSLIPYPATFSNYVGAWKTVKLGNYYLNTIIIAGFGTLLN 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L S + AYPLA FKG+ +V L++ M+IP +IV+YLT++ L N++ GV+LP Sbjct: 83 VLFSLMVAYPLARIDFKGKQLVLFLILLPMMIPVQNTLIVNYLTLRKLSLLNTYTGVILP 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 AV++F IF+MRQ +L VP D+ ++DGA EL I+W+++ PL+KP IA + + +V+ + Sbjct: 143 QAVTIFGIFMMRQAYLSVPKSFEDAARIDGAGELYIWWRIITPLIKPDIATLVVFQVITW 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 W+NFLWP++VL D KYPL+ AL YLN F NF + AAG ++++ P++V+F+F QRY + Sbjct: 203 WDNFLWPLIVLSDSNKYPLSVALVYLNSTFQVNFRYTAAGIVLAILPVVVLFIFAQRYII 262 Query: 274 EGIAGAIK 281 IAG +K Sbjct: 263 NAIAGGVK 270 >B7RBZ1.1 B7RBZ1_9THEM Permease protein of sugar ABC transporter Length = 271 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 110/248 (44%), Positives = 164/248 (66%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W+ S G NV+ PP+++P F NYV WK + Y NT+II G + N Sbjct: 23 PFYWIAKTSFEAGGNVYKYPPSLIPYPATFSNYVGAWKTVKLGNYYLNTIIIAGFGTLLN 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L S + AYPLA FKG+ +V L++ M+IP +IV+YLT++ L N++ GV+LP Sbjct: 83 VLFSLMVAYPLARIDFKGKQLVLFLILLPMMIPVQNTLIVNYLTLRKLSLLNTYTGVILP 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 AV++F IF+MRQ +L VP D+ ++DGA EL I+W+++ PL+KP IA + + +V+ + Sbjct: 143 QAVTIFGIFMMRQAYLSVPKSFEDAARIDGAGELYIWWRIITPLIKPDIATLVVFQVITW 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 W+NFLWP++VL D KYPL+ AL YLN F NF + AAG ++++ P++V+F+F QRY + Sbjct: 203 WDNFLWPLIVLSDSNKYPLSVALVYLNSTFQVNFRYTAAGIVLAILPVVVLFIFAQRYII 262 Query: 274 EGIAGAIK 281 IAG +K Sbjct: 263 NAIAGGVK 270 >C4FYW8.1 C4FYW8_ABIDE Putative uncharacterized protein Length = 281 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 112/250 (44%), Positives = 176/250 (70%), Gaps = 2/250 (0%) Query: 33 GPFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVF 92 GPF+WLL SL G N++ + L +F F NY V +FM +Y+ NTV+IT + Sbjct: 34 GPFIWLLLSSLRTGANIYDLHFS-LSSF-SFANYTGVMEFMKLHKYVWNTVVITFGAIAI 91 Query: 93 NILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVL 152 +++ S++ AYPLA +FKG+N VF +L+ATMIIP++ MI++YLTI L ++ +GV+L Sbjct: 92 DVVFSAMCAYPLATMNFKGKNFVFGVLVATMIIPAAAGMIINYLTISRMNLLDNVMGVIL 151 Query: 153 PAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMA 212 P++V F+I L+RQ +LGVP ++ D+ K+DGA + + +++LP + P I+ + + + + Sbjct: 152 PSSVKTFSIILLRQAYLGVPKELIDAAKIDGAGQFLTWLKVMLPGIIPSISTVVIFDFIG 211 Query: 213 FWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYY 272 WN FLWPI++ + P KYPLA AL YLNG FSY FG++AAGT++S+ P+++VF+ Q+ Y Sbjct: 212 NWNAFLWPIIIFKSPEKYPLATALQYLNGSFSYKFGYVAAGTILSIIPVLIVFMLCQKNY 271 Query: 273 MEGIAGAIKG 282 +E ++GA+KG Sbjct: 272 IEAVSGAVKG 281 >A9BH29.1 A9BH29_PETMO Binding-protein-dependent transport systems inner membrane component Length = 282 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 112/252 (44%), Positives = 170/252 (67%) Query: 30 FMMGPFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALG 89 F + PFLW LS SL +V + PP +P D Y V + + FPRY N++IITALG Sbjct: 30 FFIFPFLWALSTSLKTATDVLTWPPKWIPNPATLDAYKYVIENVPFPRYFLNSLIITALG 89 Query: 90 VVFNILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLG 149 ++FN+L +SL AYPLA FKGRN++F L++ M+IP +IV+++TI +L N++L Sbjct: 90 IIFNVLFASLAAYPLARLEFKGRNLIFFLILLPMMIPIQGGLIVNFITILNLKLFNTYLA 149 Query: 150 VVLPAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLE 209 VVLP+AVS+F IF+MRQ +L +P D+ D+ ++DG +E +++ +++ P+V+P + ++ Sbjct: 150 VVLPSAVSIFGIFIMRQNYLAIPRDLEDAARIDGCNEFQLWRKIMFPMVRPAATALSIIS 209 Query: 210 VMAFWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQ 269 FWN FLWP++VL+ K+PL L+YLN F N+ +I A +I+ PI+V F FTQ Sbjct: 210 FAGFWNAFLWPLIVLQSQNKFPLQVGLSYLNNMFEQNYRYITASLIIASIPILVFFFFTQ 269 Query: 270 RYYMEGIAGAIK 281 RY++EG GA+K Sbjct: 270 RYFIEGYQGALK 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,520,897,466 Number of extensions: 60214899 Number of successful extensions: 203241 Number of sequences better than 1.0e-05: 6029 Number of HSP's gapped: 196701 Number of HSP's successfully gapped: 6029 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)