BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0003.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0W2W5.1 C0W2W5_9ACTO ABC superfamily ATP binding cassette trans... 201 8e-50 C5CIL8.1 C5CIL8_9THEM Binding-protein-dependent transport system... 199 2e-49 A8F3E4.1 A8F3E4_THELT Binding-protein-dependent transport system... 199 2e-49 C4FYW7.1 C4FYW7_ABIDE Putative uncharacterized protein 197 1e-48 Q7NU05.1 Q7NU05_CHRVO Probable sugar ABC transporter permease pr... 192 2e-47 >C0W2W5.1 C0W2W5_9ACTO ABC superfamily ATP binding cassette transporter, membrane protein Length = 296 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 155/247 (62%) Query: 1 MTPGLLFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVY 60 M P L+ L F F PI IPL DYS+I + ++G +NF RA D F I++ N++ + Sbjct: 15 MAPALVMLVLFVFLPIAGSIPLVFYDYSMIGDVEFIGLDNFRRALSDGTFHIAIVNTITF 74 Query: 61 VLIVPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXX 120 V +VPVIQ+ SI +A LVN ++ G+ FRT +Y+PV+TSMVAV++IWS+ Sbjct: 75 VAVVPVIQLCSIALASLVNQKLKGIVFFRTLFYVPVITSMVAVSIIWSFLFDSHGIINTW 134 Query: 121 XIQAGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGA 180 ++ G+ + + ++++S TA+ +MFIT+W+ +P+++ EAAR DGA Sbjct: 135 LMEWGLANQPLGFVNSSKTAMICIMFITLWQGLGYYMMLYLAGLQSIPAEIEEAARTDGA 194 Query: 181 NFLKLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGL 240 N L++ + +P+L+P+I FC+L SV+ A+ +FD ++++T+GGP ST+ + Y + + Sbjct: 195 NALQVFFRIKVPMLKPYIWFCSLNSVISAVAIFDPIFVMTQGGPNNSTMVINYYSYIRAF 254 Query: 241 EQFNFGY 247 + F FGY Sbjct: 255 KDFEFGY 261 >C5CIL8.1 C5CIL8_9THEM Binding-protein-dependent transport systems inner membrane component Length = 408 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%) Query: 5 LLFLAAFTFWPIIYGIPLSLTDYSVIT-ETHYVGFENFTRAFQDHNFIISLWNSLVYVLI 63 LL + FTF+P+I G+ LS +Y+++T T ++G EN+ FQD F ISL N+ Y+++ Sbjct: 137 LLLMGIFTFYPLIKGVVLSFAEYNMLTGRTKWIGLENYREIFQDKYFFISLRNTFKYLIV 196 Query: 64 VPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXXXIQ 123 VP IQ SI++A+LVN ++PG+K+FRT +YIPV+T V V+L W W + Sbjct: 197 VPPIQFFSIVLAVLVNQKLPGIKLFRTLFYIPVITGAVIVSLTWRWIYAEDGLLNYILMN 256 Query: 124 AGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGANFL 183 +I V WL+ AL+ MF+T W+ +P++LYEAA +DGA Sbjct: 257 LHVIKEPVLWLTDRGVALWAAMFVTFWRGLGYYMVIYLAGLQNIPNELYEAAALDGATGK 316 Query: 184 KLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGLEQF 243 K ++T+PLLRP IL C+++S M A RVF+E+++LT+G TSTL +Y + ++ Sbjct: 317 KKFFYITLPLLRPSILLCSVLSTMAAFRVFEEIFLLTRGAADTSTLAYEIY--DRAFVRY 374 Query: 244 NFG 246 NFG Sbjct: 375 NFG 377 >A8F3E4.1 A8F3E4_THELT Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 3/243 (1%) Query: 5 LLFLAAFTFWPIIYGIPLSLTDYSVITET-HYVGFENFTRAFQDHNFIISLWNSLVYVLI 63 L LA FT++PI G+ LS T+Y+++ +T +VG +N+ FQD F ++L N Y+L+ Sbjct: 21 LTLLAIFTYYPIFRGVFLSFTEYNMLLQTGKWVGLKNYISLFQDRYFYMALGNIFKYLLV 80 Query: 64 VPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXXXIQ 123 VP IQ SIL+A+ VN RIPG+K+FRT +Y+PV+T V V++ W W + Sbjct: 81 VPFIQFFSILLAVAVNQRIPGIKIFRTLFYVPVITGAVIVSMAWKWIFNVDGILNNFLMN 140 Query: 124 AGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGANFL 183 AG+I + WL+ + A+Y MF+T W+ +PS++YEAAR+DGAN Sbjct: 141 AGLIKEPILWLTDARFAIYSAMFVTFWRGLGYYMVIYLAGLQNIPSEIYEAARIDGANRR 200 Query: 184 KLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGLEQF 243 + +TIPLLRP +LFC +IS + A++VF+E+Y+LT+GG T+T+ +Y ++ Sbjct: 201 QTFFRITIPLLRPTMLFCFIISSLAALKVFEEIYLLTQGGSETTTMMYLIY--DYAFNRY 258 Query: 244 NFG 246 FG Sbjct: 259 RFG 261 >C4FYW7.1 C4FYW7_ABIDE Putative uncharacterized protein Length = 298 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 162/277 (58%) Query: 1 MTPGLLFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVY 60 M P L+ + FT PI + L DYSV+ +T +VG NF +AF D FII++ NS+++ Sbjct: 20 MAPALIIILLFTVIPIFASLGLMFFDYSVLGKTKFVGLGNFIKAFNDREFIIAIKNSVIF 79 Query: 61 VLIVPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXX 120 V +VPVIQ++SIL+++LVN ++ G+ +FRT +YIPV+TSMVAV++IW + Sbjct: 80 VAVVPVIQILSILLSLLVNRKLRGIGIFRTLFYIPVITSMVAVSIIWGFIFNSSGVINTL 139 Query: 121 XIQAGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGA 180 G+I+ + ++S TA+ LMFIT+W+ +PS+L EAA++DGA Sbjct: 140 LSDLGLITQPLGFISDKKTAMLCLMFITLWQGLGYYMMMYLAGLQGIPSELGEAAKIDGA 199 Query: 181 NFLKLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGL 240 L++I V IP L+P I CTL S++ AI VFD V++L+KGGP +T+ + Y + K Sbjct: 200 GTLRVITSVIIPQLKPFIWLCTLNSIISAIGVFDVVFVLSKGGPDNATMVINYYSYTKAF 259 Query: 241 EQFNFGYXXXXXXXXXXXXXXXXXXXFRLNRKGGVNS 277 +F FGY F ++GG+ + Sbjct: 260 GEFRFGYAAAVGAVQAIITSIVSIAVFIYGKRGGMTN 296 >Q7NU05.1 Q7NU05_CHRVO Probable sugar ABC transporter permease protein Length = 289 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 149/248 (60%), Gaps = 2/248 (0%) Query: 1 MTPGLLFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVY 60 ++P LL + AFTFWP+++G ++ T Y +++ +VG +NF D FI +L NSL Y Sbjct: 13 LSPALLLMGAFTFWPLLFGGYVAFTRYDLVSPPQWVGLDNFRYLLDDPVFIQALGNSLRY 72 Query: 61 VLIVPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXX 120 +L+VP IQ+ I +A+L N +PG+K FR A Y+PV+T++ V ++W+W Sbjct: 73 LLVVPAIQLAGIALAVLANRALPGIKWFRAAVYLPVITTVSVVGIMWNWMYADYGVLNGA 132 Query: 121 XIQAGIISGQ--VSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVD 178 G ++ + V +LS ALY +MF+T W+ +P+++ EAAR+D Sbjct: 133 LHWLGWVAREHDVGFLSDENLALYSVMFVTFWRGIGYYMVLYLAGLQSIPAEMQEAARLD 192 Query: 179 GANFLKLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQK 238 GA+ + +T+P+L+P ILFC+LIS + AI+ F+EV ++T+G P ST T+ Y F + Sbjct: 193 GASAWQRFWRITLPMLKPTILFCSLISTLDAIKAFEEVLVMTRGAPMNSTYTALYYAFHQ 252 Query: 239 GLEQFNFG 246 G Q +FG Sbjct: 253 GFNQLDFG 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,310,614,403 Number of extensions: 44140108 Number of successful extensions: 184563 Number of sequences better than 1.0e-05: 5466 Number of HSP's gapped: 174501 Number of HSP's successfully gapped: 5487 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)