BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0002.p (442 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4FYW6.1 C4FYW6_ABIDE Putative uncharacterized protein 276 3e-72 C0W2W4.1 C0W2W4_9ACTO ABC superfamily ATP binding cassette trans... 273 3e-71 A8F3E5.1 A8F3E5_THELT Extracellular solute-binding protein family 1 246 4e-63 A0ZCY8.1 A0ZCY8_NODSP Periplasmic sugar-binding protein of ABC t... 244 2e-62 Q8DHB1.1 Q8DHB1_THEEB Periplasmic sugar-binding protein of sugar... 241 2e-61 >C4FYW6.1 C4FYW6_ABIDE Putative uncharacterized protein Length = 448 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 235/393 (59%), Gaps = 6/393 (1%) Query: 50 SPQAEPVTLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTAS 109 S EPVT+EFWTI+L+ F ++FN LIA Y+ ++P VT+ W D PYD + +L+T+ A Sbjct: 58 STTTEPVTVEFWTISLKANFEEFFNKLIADYQNANPNVTINWVDVPYDDVQSKLVTAVAG 117 Query: 110 GKSPDVVNLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTG 169 G SPDVVNLNT+ A L + AL++L + TDE+++ Y E ++NS + Y+ PWY Sbjct: 118 GTSPDVVNLNTQMALTLVGQDALVDLNKAATDEQKSIYIESLWNSAKVGDSVYAFPWYAS 177 Query: 170 TEVLFMNKKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQLVSKLFPIDGISI 229 +++F N++L++K G++ P T ++ +E A + H T A + L + I I Sbjct: 178 PDIMFYNQELMKKGGIE---APATFDQALEKAEKFHNDTKAYLFLPDEFFNLLIEENIPI 234 Query: 230 LNEDKTAAAFNTPEAEAMISQMRDLMKEGVVLKED-ADFKKQIQYFSGQQVAFQLSGPTF 288 LNED+T AAFNT A ++ + + +GV+ K + + + ++ F ++A S + Sbjct: 235 LNEDRTKAAFNTQAAVDLLKKYKSYTDKGVLPKTNWGSWDEALKLFESGKLAIVSSSGSS 294 Query: 289 INFIKTSAPDVYANTIAVQLP-TGKANLRLSNSMDLVVPQKSKNPEQAVEFAAFVTNADN 347 + IK APD+Y TIAV P TG L + M+LVVP+ SKN E A+ FA ++TN N Sbjct: 295 LGRIKDEAPDIY-KTIAVSTPLTGSTGLSRNPLMNLVVPKASKNQEAAIAFANYITNDAN 353 Query: 348 QTAFSKVANTLPSSKASIQDPFFTESDGTLEAEAKVVSSQSLDKATDYMVGVPNASDINS 407 Q AF K + PS+K + +D FFT TLE +A +S+++ + D+ +GV N I + Sbjct: 354 QLAFCKTVSIFPSTKKASEDSFFTSDTKTLEGQASAMSAKASLTSQDFSLGVANQGTIQA 413 Query: 408 AIARGFQEILLNGADIKQTLDAVEKEVNRIISQ 440 AI + ++ ++NG DI L E++VN+I+++ Sbjct: 414 AINKAYEASIINGDDIAAALKQAEEDVNKILAE 446 >C0W2W4.1 C0W2W4_9ACTO ABC superfamily ATP binding cassette transporter, solute-binding protein Length = 422 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 227/387 (58%), Gaps = 5/387 (1%) Query: 57 TLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTASGKSPDVV 116 TLEFWTIALQPTF DYFN LI YEE++PGV V W D PYD+I ++L+T++A G +PDVV Sbjct: 39 TLEFWTIALQPTFTDYFNGLIKAYEEANPGVKVNWTDLPYDSIEEKLITASAGGTAPDVV 98 Query: 117 NLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFMN 176 NLNTEFA + K AL ++ + T EE+ Y E +++S + Y+ PWY ++ N Sbjct: 99 NLNTEFALTMAGKKALADIAKLTTSEEQAVYIESLWDSAKLGDAVYAFPWYAAPNIMIYN 158 Query: 177 KKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQLVSKLFPIDGISILNEDKTA 236 K L EKA L + P T E ++ A + TGA + + LF + ++IL+EDKT Sbjct: 159 KSLFEKARL--TSQPTTYTEALQMAPTMKAATGAYLFNPPTLFNLFSEEDVAILSEDKTK 216 Query: 237 AAFNTPEAEAMISQMRDLMKEGVVLKED-ADFKKQIQYFSGQQVAFQLSGPTFINFIKTS 295 A F T A+ ++S ++L + + K D + +++ F Q+A S + IK Sbjct: 217 ATFATDTADKLLSSFKELTDKDDLPKTDWGQWDTELKLFETGQLAIINSSSASVARIKDE 276 Query: 296 APDVYANTIAVQLP-TGKANLRLSNSMDLVVPQKSKNPEQAVEFAAFVTNADNQTAFSKV 354 APDVY I + +P G A + + M+LV+P KS E A +FA F+T DNQ +F+K Sbjct: 277 APDVY-EQIGIAMPLKGAAGVSRNPLMNLVIPSKSSQQEAAAKFAMFITGDDNQLSFAKE 335 Query: 355 ANTLPSSKASIQDPFFTESDGTLEAEAKVVSSQSLDKATDYMVGVPNASDINSAIARGFQ 414 A PS+ + QDP+FT T+E +A + +++ + D+ +GV S I + + ++ Sbjct: 336 AGIFPSTVKASQDPYFTSDTSTIEGQASAMCAEASKTSADFSLGVEGQSTIADEVNKAYE 395 Query: 415 EILLNGADIKQTLDAVEKEVNRIISQG 441 ++NG D+K++L + ++ V+ ++ QG Sbjct: 396 AAVINGDDVKESLASAQEAVDALLKQG 422 >A8F3E5.1 A8F3E5_THELT Extracellular solute-binding protein family 1 Length = 415 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/395 (32%), Positives = 231/395 (58%), Gaps = 10/395 (2%) Query: 56 VTLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTASGKSPDV 115 VT+EFWT++L PTF+DY +I ++E +P + ++W D PY + Q+L + A+ ++PDV Sbjct: 21 VTVEFWTLSLSPTFDDYIKAIIEEFESQNPEIKIKWLDVPYGSAVQKLTAAIAARQAPDV 80 Query: 116 VNLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFM 175 VNLNT +A ++GAL L + + E++ Y+E ++ +TV++G +Y+ PWY +L Sbjct: 81 VNLNTTWAIDFAAQGALRPLDDLINHEDKELYWEKLWKATVLNGNSYAFPWYASIPILMY 140 Query: 176 NKKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQLVS-KLFPIDGISILNEDK 234 N+ + E+AGLDP NPPKT +E+ E++R I + A G+ +++ ++GI I+ +D Sbjct: 141 NRDMFERAGLDPDNPPKTWDEVFEYSRIIRAKLDAYGFEPNIIALDELLLEGIPIVTDDG 200 Query: 235 TAAAFNTPEAEAMISQMRDLMKEGVVLKEDADFKKQIQYFSGQQVAFQLSGPTFINFIKT 294 AAFNT EA + + +E ++ + + + +++ ++A +G T + I+ Sbjct: 201 KKAAFNTQEAVKKLEWFQKAYRENLMPRTLGGYGEAREFYQSGRLAMYPAGLTMLKHIEV 260 Query: 295 SAPDVYANTIAVQLPTGKANLRLSNSMDLVVPQKSKNPEQAVEFAAFVTNADNQTAFSKV 354 ++PD+Y T P GK + + M+L +P SK P++A +FA FVT+A Q FSK Sbjct: 261 NSPDIYKVTDVSSHPLGKGGMIKVSLMNLAIPITSKCPKEAAKFALFVTSARWQIEFSKY 320 Query: 355 ANTLPSSKASIQ--DPFFTES-DGTLEAEAKVVSSQSLDKATDY----MVGVPNA--SDI 405 A +PS+K ++ + F + G L A+A +++S+S+ A D + G+P+ +D+ Sbjct: 321 ATVIPSTKQGLETSEEFLNRAKSGDLSAKAMLMASKSMQNAVDLNSVAVHGIPSEKYADV 380 Query: 406 NSAIARGFQEILLNGADIKQTLDAVEKEVNRIISQ 440 I + + + ++ LD E+EVN+I+S+ Sbjct: 381 RKVIQDYWMKAIKGELSAQEALDLAEQEVNKILSK 415 >A0ZCY8.1 A0ZCY8_NODSP Periplasmic sugar-binding protein of ABC transporter Length = 431 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/401 (35%), Positives = 230/401 (57%), Gaps = 22/401 (5%) Query: 48 TDSPQAEPVTLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTST 107 T P + T+EFWT+ LQP FNDYF LI +E + G+ V W D P+ A+ ++LT+ Sbjct: 34 TQQPASAEATVEFWTMQLQPQFNDYFQSLIGNFETQNSGIKVNWVDIPWSAMENKILTAV 93 Query: 108 ASGKSPDVVNLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWY 167 ++ PDVVNLN FASQL + A L+L ++D ER+SY I+ ++ ++GK++ +PWY Sbjct: 94 SANTPPDVVNLNPVFASQLAGRNAWLDLDTKISDAERSSYLPNIWQASTLNGKSFGIPWY 153 Query: 168 TGTEVLFMNKKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQL-------VSK 220 T + N L+++AG+ PP T EL ++A++I +TG + V + Sbjct: 154 LTTRLTIYNIDLLKQAGI--TQPPATYAELADFAQKIQDKTGKYAFFVTFAPQDSGEVLE 211 Query: 221 LFPIDGISILNEDKTAAAFNTPEAEAMISQMRDLMKEGVVLKED--ADFKKQIQYFSGQQ 278 F G++++N + AAFN+PE +A DL K+G++ +E + I + Q Sbjct: 212 SFVQMGVTLVNTEGK-AAFNSPEGKAAFQYWVDLYKKGLLPRESLTQGHRHAIDLYQSGQ 270 Query: 279 VAFQLSGPTFINFIKTSAPDV-YANTIAVQLP--TGKANLRLSNSMDLVVPQKSKNPEQA 335 AF SGP F+ I +AP + A+ IA QL TGK N+ + M++VVP+ SK+P+ A Sbjct: 271 TAFLASGPEFLKTIANNAPQIAAASAIAPQLTGDTGKKNVAV---MNVVVPRASKHPDAA 327 Query: 336 VEFAAFVTNADNQTAFSKVANTLPSSKASIQDPFFT---ESDGTLEAEAKVVSSQSLDKA 392 V+FA F+TN +NQ AF+K AN LPS+K ++ D +F ++ T+E A+V+S++ L +A Sbjct: 328 VKFALFLTNDENQLAFAKAANVLPSTKKALADSYFQNVPDTASTVE-RARVISAKQLQQA 386 Query: 393 TDYMVGVPNASDINSAIARGFQEILLNGADIKQTLDAVEKE 433 + ++ + AI Q +L ++Q L+ +E Sbjct: 387 EILTPTLKDSKRLQKAIYENLQAAMLEQKTVEQALEDAAQE 427 >Q8DHB1.1 Q8DHB1_THEEB Periplasmic sugar-binding protein of sugar ABC transporter Length = 437 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 227/400 (56%), Gaps = 20/400 (5%) Query: 50 SPQAEPVTLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTAS 109 +P + +EFWT+ LQP F DYFN LIA++E HP V V W D P+ A+ ++L + + Sbjct: 40 APPPQGTQIEFWTMQLQPKFTDYFNRLIAEFEAQHPNVHVRWVDIPWTAMQTKILMAVLA 99 Query: 110 GKSPDVVNLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTG 169 G +PDVVNLN +FA+ L + A LNL +Y+ R Y I+ +T ++GK++++PWY Sbjct: 100 GTAPDVVNLNPDFAALLAGRNAWLNLNDYVPPAVRERYLPNIWQATTLEGKSFAVPWYLT 159 Query: 170 TEVLFMNKKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGY--------AQQLVSKL 221 + V NK ++ AG+D PP+T EL A+ + ++TG + + +L+ + Sbjct: 160 SRVTIYNKAILAAAGVD--RPPQTFAELASVAKAVKEKTGKYAFFITMVPEDSAELMQTM 217 Query: 222 FPIDGISILNEDKTAAAFNTPEAEAMISQMRDLMKEGV----VLKEDADFKKQIQYFSGQ 277 + G+S++ +D+ AAFN+P +A+ DL ++G+ VL E ++ I+ + Sbjct: 218 VQM-GVSLV-DDQGRAAFNSPAGKAVFQYWLDLYRQGLLPPQVLTE--GHRQGIELYQSG 273 Query: 278 QVAFQLSGPTFINFIKTSAPDVYANTIAVQLPTGKANLRLSNSMDLVVPQKSKNPEQAVE 337 Q A ++ P F+N I T+AP + A + A TG+ + M+L+VP++S++PE AV+ Sbjct: 274 QTALLMTSPEFLNAIATNAPSIAAVSAAAPQLTGETGKKNVAVMNLLVPRQSRHPELAVQ 333 Query: 338 FAAFVTNADNQTAFSKVANTLPSSKASIQDPFFTE--SDGTLEAEAKVVSSQSLDKATDY 395 FA FVTN +NQ AF+K AN LPS++A++ D +F + T A+ +S+ +++A Sbjct: 334 FALFVTNHENQLAFAKEANVLPSTQAALADAYFRTIGENATPVDIARCISAAQINQAEVL 393 Query: 396 MVGVPNASDINSAIARGFQEILLNGADIKQTLDAVEKEVN 435 + + + ++ + Q +LL I + L E N Sbjct: 394 IPPLRDIKELQRLLYENLQAVLLGQKTIDRALKDAETAWN 433 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,351,070,039 Number of extensions: 92537659 Number of successful extensions: 224213 Number of sequences better than 1.0e-05: 1552 Number of HSP's gapped: 223654 Number of HSP's successfully gapped: 1552 Length of query: 442 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 303 Effective length of database: 1,751,175,118 Effective search space: 530606060754 Effective search space used: 530606060754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)