BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0020.p
         (116 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q72YN3.1 Q72YN3_BACC1 Transcription regulator, ArsR family            137   2e-31
C3C9K0.1 C3C9K0_BACTU Transcriptional repressor sdpR                  137   2e-31
C2MSE4.1 C2MSE4_BACCE Transcriptional repressor sdpR                  137   2e-31
C2QZY3.1 C2QZY3_BACCE Transcriptional repressor sdpR                  137   3e-31
C2YY65.1 C2YY65_BACCE Transcriptional regulator ArsR                  136   5e-31

>Q72YN3.1 Q72YN3_BACC1 Transcription regulator, ArsR family
          Length = 96

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QDEKKGQFVMYSLNTTVFQDLLTWVFTFTNKGEE 94


>C3C9K0.1 C3C9K0_BACTU Transcriptional repressor sdpR
          Length = 96

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QDEKKGQFVMYSLNTTVFQDLLTWVFTFTNKGEE 94


>C2MSE4.1 C2MSE4_BACCE Transcriptional repressor sdpR
          Length = 96

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QDEKKGQFVMYSLNTTVFQDLLTWVFTFTNKGEE 94


>C2QZY3.1 C2QZY3_BACCE Transcriptional repressor sdpR
          Length = 96

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QDEKKGQFVVYSLNTTVFQDLLTWVFTFTNKGEE 94


>C2YY65.1 C2YY65_BACCE Transcriptional regulator ArsR
          Length = 96

 Score =  136 bits (343), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 80/94 (85%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G E
Sbjct: 61 QDEKKGQFVMYSLNTTVFQDLLTWVFTFTNKGGE 94


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 697,048,031
Number of extensions: 26602962
Number of successful extensions: 79095
Number of sequences better than 1.0e-05: 1214
Number of HSP's gapped: 79966
Number of HSP's successfully gapped: 1214
Length of query: 116
Length of database: 3,060,696,203
Length adjustment: 83
Effective length of query: 33
Effective length of database: 2,278,751,958
Effective search space: 75198814614
Effective search space used: 75198814614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)