BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0019.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDH9.1 B3KDH9_9BACI SNARE associated Golgi protein 275 2e-72 C3B6L5.1 C3B6L5_BACMY Uncharacterized membrane protein yngC 265 1e-69 C3AUJ9.1 C3AUJ9_BACMY Uncharacterized membrane protein yngC 263 6e-69 C2YSR4.1 C2YSR4_BACCE Uncharacterized membrane protein yngC 259 8e-68 C3FSN8.1 C3FSN8_BACTB Uncharacterized membrane protein yngC 254 5e-66 >B3KDH9.1 B3KDH9_9BACI SNARE associated Golgi protein Length = 203 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 163/197 (82%) Query: 6 DLISHLFEWIQSLGYFGIMIGLMIEVIPSEIVLAFGGYLVSQGEINYFGAVLFGTVGGVI 65 + + LFEWIQ LGYFGIM+GLM+EVIPSEIVLA+GGYLVS GE+++ GA++FGTVGGV+ Sbjct: 6 EAVGRLFEWIQQLGYFGIMLGLMVEVIPSEIVLAYGGYLVSMGEVHFIGAMIFGTVGGVL 65 Query: 66 AQIFVYWIGRYGGRPVLEKYGKYIFIKKKHIDHSEEWFNKYGTGVIFTARFIPVVRHAIS 125 AQ+F+YWIGRYGGRP LEKYGKYI IKKKHID++EEWF KYGTGVIFTARF+PVVRHAIS Sbjct: 66 AQLFIYWIGRYGGRPFLEKYGKYILIKKKHIDYAEEWFGKYGTGVIFTARFVPVVRHAIS 125 Query: 126 VPAGISRMPLGKFTLLTTLAVIPWSALFVYLGYTLGDKWETIDEVAAKYTHEXXXXXXXX 185 +PAGIS+M +G+FTLLTTLAVIPW+ALF+YLG LGD+WE IDE A Y E Sbjct: 126 IPAGISKMHVGRFTLLTTLAVIPWTALFLYLGLLLGDQWEHIDEKAGPYVREILLGALAV 185 Query: 186 XXXYFLFKWYKSKKKGS 202 YFL KW KS K S Sbjct: 186 MILYFLIKWIKSAKARS 202 >C3B6L5.1 C3B6L5_BACMY Uncharacterized membrane protein yngC Length = 203 Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/200 (63%), Positives = 159/200 (79%) Query: 1 LHVISDLISHLFEWIQSLGYFGIMIGLMIEVIPSEIVLAFGGYLVSQGEINYFGAVLFGT 60 ++++ DLI + +++ LGY+G+M+GLMIE+IPSEIVLA+ GYLVS G I++FGA++FGT Sbjct: 4 VNMLGDLIHSILVFLEGLGYWGVMLGLMIEIIPSEIVLAYAGYLVSSGSISFFGAIVFGT 63 Query: 61 VGGVIAQIFVYWIGRYGGRPVLEKYGKYIFIKKKHIDHSEEWFNKYGTGVIFTARFIPVV 120 +GGVIAQ+F+YWIGRYGGRPVLE+YGKYIFI+KKHIDH+E WFN+YGTGVIFTARFIP V Sbjct: 64 IGGVIAQLFIYWIGRYGGRPVLERYGKYIFIQKKHIDHAEAWFNRYGTGVIFTARFIPFV 123 Query: 121 RHAISVPAGISRMPLGKFTLLTTLAVIPWSALFVYLGYTLGDKWETIDEVAAKYTHEXXX 180 RHAIS+PAGI++M +F LTTLA+IPWSALFVYLG+ LG+KWE I+EVA Y Sbjct: 124 RHAISIPAGIAKMSHVRFITLTTLAIIPWSALFVYLGWKLGEKWENINEVAGPYVKYFAI 183 Query: 181 XXXXXXXXYFLFKWYKSKKK 200 YF K K+ Sbjct: 184 TAVLLIVFYFAAKILMRKRS 203 >C3AUJ9.1 C3AUJ9_BACMY Uncharacterized membrane protein yngC Length = 198 Score = 263 bits (673), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 156/191 (81%) Query: 3 VISDLISHLFEWIQSLGYFGIMIGLMIEVIPSEIVLAFGGYLVSQGEINYFGAVLFGTVG 62 ++ +LI + +++ LGY+G+M+GLMIE+IPSEIVLA+ GYLVS G I++FGAV+FGT+G Sbjct: 1 MLGNLIHSILVFLEGLGYWGVMLGLMIEIIPSEIVLAYAGYLVSSGSISFFGAVVFGTIG 60 Query: 63 GVIAQIFVYWIGRYGGRPVLEKYGKYIFIKKKHIDHSEEWFNKYGTGVIFTARFIPVVRH 122 GVIAQ+F+YWIGRYGGRPVLE+YGKYIFI+KKHIDH+E WFN+YGTGVIFTARFIP VRH Sbjct: 61 GVIAQLFIYWIGRYGGRPVLERYGKYIFIQKKHIDHAEAWFNRYGTGVIFTARFIPFVRH 120 Query: 123 AISVPAGISRMPLGKFTLLTTLAVIPWSALFVYLGYTLGDKWETIDEVAAKYTHEXXXXX 182 AIS+PAGI++M +F LTTLA+IPWSALFVYLG+ LG+KWE I+EVA Y Sbjct: 121 AISIPAGIAKMSHVRFITLTTLAIIPWSALFVYLGWKLGEKWENINEVAGPYIKYFAITA 180 Query: 183 XXXXXXYFLFK 193 YF+ K Sbjct: 181 VALAVFYFVVK 191 >C2YSR4.1 C2YSR4_BACCE Uncharacterized membrane protein yngC Length = 201 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 123/201 (61%), Positives = 155/201 (77%) Query: 3 VISDLISHLFEWIQSLGYFGIMIGLMIEVIPSEIVLAFGGYLVSQGEINYFGAVLFGTVG 62 ++S I + + + LGY+GIM+GLMIE+IPSEIVLA+ GYLV G I++ GAV+FGT+G Sbjct: 1 MVSSFIHSVLTFFEGLGYWGIMLGLMIEIIPSEIVLAYAGYLVFNGSISFVGAVIFGTIG 60 Query: 63 GVIAQIFVYWIGRYGGRPVLEKYGKYIFIKKKHIDHSEEWFNKYGTGVIFTARFIPVVRH 122 GVIAQIF+YW+GRYGGRP+LE+YGKYIFI KKHID +E+WFN+YGTGVIFTARFIPVVRH Sbjct: 61 GVIAQIFIYWLGRYGGRPILERYGKYIFIHKKHIDAAEDWFNRYGTGVIFTARFIPVVRH 120 Query: 123 AISVPAGISRMPLGKFTLLTTLAVIPWSALFVYLGYTLGDKWETIDEVAAKYTHEXXXXX 182 AIS+PAGI++MP +FT LT LA+IPWS +F+YLG LG+ WE I+EVA Y Sbjct: 121 AISIPAGITKMPFLRFTTLTALAIIPWSIIFIYLGEKLGENWENINEVAGPYVKSFAIGG 180 Query: 183 XXXXXXYFLFKWYKSKKKGSA 203 YF+ K + K+K A Sbjct: 181 VILILLYFIIKKWTKKRKNLA 201 >C3FSN8.1 C3FSN8_BACTB Uncharacterized membrane protein yngC Length = 197 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/190 (63%), Positives = 154/190 (81%) Query: 3 VISDLISHLFEWIQSLGYFGIMIGLMIEVIPSEIVLAFGGYLVSQGEINYFGAVLFGTVG 62 ++ +LI + +++ LGY+GIM+GLM+EVIPSEIVL++ GYLVS G I ++GAV FGT+G Sbjct: 1 MLGELIHSVLVFLEGLGYWGIMLGLMLEVIPSEIVLSYAGYLVSTGSITFWGAVAFGTIG 60 Query: 63 GVIAQIFVYWIGRYGGRPVLEKYGKYIFIKKKHIDHSEEWFNKYGTGVIFTARFIPVVRH 122 GVIAQ+F+YWIGRYGGRPVLE+YGKYI I+KKHID++E+WFN+YGTGVIFTARFIPVVRH Sbjct: 61 GVIAQLFIYWIGRYGGRPVLERYGKYILIQKKHIDYAEDWFNRYGTGVIFTARFIPVVRH 120 Query: 123 AISVPAGISRMPLGKFTLLTTLAVIPWSALFVYLGYTLGDKWETIDEVAAKYTHEXXXXX 182 AIS+PAGI++M KF LTTLAVIPWS +FVYLG+ LG +WE+I++VA Y Sbjct: 121 AISIPAGIAKMSHAKFITLTTLAVIPWSIVFVYLGFKLGTEWESINKVAGPYVKYFALAA 180 Query: 183 XXXXXXYFLF 192 YF+F Sbjct: 181 IVCAIGYFVF 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.145 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,995,370 Number of extensions: 53801462 Number of successful extensions: 216328 Number of sequences better than 1.0e-05: 2037 Number of HSP's gapped: 215943 Number of HSP's successfully gapped: 2037 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)