BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0017.p (209 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDH7.1 B3KDH7_9BACI Beta-lactamase domain protein 322 1e-86 B1D5N8.1 B1D5N8_9BACL Beta-lactamase domain protein 281 2e-74 C0ZGD7.1 C0ZGD7_BREBN Putative uncharacterized protein 223 1e-56 Q5WF26.1 Q5WF26_BACSK Putative uncharacterized protein 186 1e-45 C2QYB4.1 C2QYB4_BACCE Metallo-beta-lactamase 183 9e-45 >B3KDH7.1 B3KDH7_9BACI Beta-lactamase domain protein Length = 212 Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/207 (72%), Positives = 176/207 (85%) Query: 2 LNIRSYNLGPLQTNAYLLTGADPGRGVIIDPGANPAALLRAAQEMEIEAVLLTHAHFDHI 61 L+I ++NLGPLQTNAYLLTG G+ +IIDPG NP L++ ++EIEA+LLTHAHFDH+ Sbjct: 3 LHIETFNLGPLQTNAYLLTGPVEGKAIIIDPGMNPGPLVKRIADLEIEAILLTHAHFDHM 62 Query: 62 AGLDEIRRAKKCPVYLHTLESEWLGSPKLNGSLMWPDVTPPISTEPAEYDLADGQVLNLL 121 G++EIR+ K CPVYLHTLESEWL SPKLNGSLMWP VT P+STEPAEYDLADG L L+ Sbjct: 63 GGVEEIRKLKDCPVYLHTLESEWLASPKLNGSLMWPQVTGPLSTEPAEYDLADGLELQLI 122 Query: 122 GLTFRVMHTPGHSPGSVSFLCGSDLFSGDVLFKLGVGRTDLTGGRERDLIDSIRNKLYRL 181 G TF+V HTPGHSPGSVSF CG+DLFSGDVLF+LGVGRTDL GGRERDL+DSI+N LY Sbjct: 123 GHTFKVFHTPGHSPGSVSFKCGNDLFSGDVLFRLGVGRTDLPGGRERDLVDSIQNTLYTF 182 Query: 182 DEEVRVFPGHGPRTTIGFERQCNPYVP 208 +EV V+ GHGPRTTIG+E+Q NPYVP Sbjct: 183 ADEVVVYSGHGPRTTIGYEKQRNPYVP 209 >B1D5N8.1 B1D5N8_9BACL Beta-lactamase domain protein Length = 211 Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/210 (63%), Positives = 163/210 (77%), Gaps = 4/210 (1%) Query: 2 LNIRSYNLGPLQTNAYLLTGADPG----RGVIIDPGANPAALLRAAQEMEIEAVLLTHAH 57 + I ++ LGPLQTNAYLLT D RG+IIDPG P LL +++EA+LLTHAH Sbjct: 1 MRIETFTLGPLQTNAYLLTEKDEQSGEERGIIIDPGMGPKRLLDRIAGVKVEAILLTHAH 60 Query: 58 FDHIAGLDEIRRAKKCPVYLHTLESEWLGSPKLNGSLMWPDVTPPISTEPAEYDLADGQV 117 FDH+ G++EIR A CPVY+H LE++WL + NGS+ W DVTPP++T PAEY L +GQ Sbjct: 61 FDHMGGVEEIRTAAGCPVYIHDLEADWLTDARKNGSMRWSDVTPPLTTGPAEYALDEGQT 120 Query: 118 LNLLGLTFRVMHTPGHSPGSVSFLCGSDLFSGDVLFKLGVGRTDLTGGRERDLIDSIRNK 177 LN +G TF+V+HTPGHSPGSVSFLCG+D+FSGDVLF+ VGRTDL GGRERDL DSI+ K Sbjct: 121 LNFIGHTFKVLHTPGHSPGSVSFLCGNDIFSGDVLFRQSVGRTDLPGGRERDLFDSIQLK 180 Query: 178 LYRLDEEVRVFPGHGPRTTIGFERQCNPYV 207 LY+L EV+V+PGHGP+TTIGFE NPYV Sbjct: 181 LYKLSPEVKVYPGHGPKTTIGFEMANNPYV 210 >C0ZGD7.1 C0ZGD7_BREBN Putative uncharacterized protein Length = 214 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/206 (52%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 2 LNIRSYNLGPLQTNAYLLTGADPGRGVIIDPGANPAALLRAAQEMEIEAVLLTHAHFDHI 61 L I SY LG QTNAY++T + ++IDPG P LLRA + A+LLTHAH DHI Sbjct: 5 LAIESYALGAFQTNAYVVTNTATNQTIVIDPGMEPDQLLRALANKNVVAILLTHAHLDHI 64 Query: 62 AGLDEIRRAKKCPVYLHTLESEWLGSPKLNGSLMWPDVTPPISTEPAEYDLADGQVLNLL 121 GL+++R K PVY+H LE EWL +P LNGS W ++ I E AE++L DGQ L L Sbjct: 65 GGLNQVRELTKAPVYIHPLEQEWLTNPDLNGSRRW-NLPELIICERAEHELEDGQTLELA 123 Query: 122 GLTFRVMHTPGHSPGSVSFLCGSDLFSGDVLFKLGVGRTDLTGGRERDLIDSIRNKLYRL 181 G +V+HTPGHSPGS SF+ G F GDVLF +GRTDL GG L+ SI++KL+ L Sbjct: 124 GFHIQVLHTPGHSPGSCSFVIGQHCFGGDVLFNQSIGRTDLFGGDFETLMISIQDKLFEL 183 Query: 182 DEEVRVFPGHGPRTTIGFERQCNPYV 207 D+E V+PGHGP+TTI +E+ NP+V Sbjct: 184 DDETIVYPGHGPKTTIDYEKTYNPFV 209 >Q5WF26.1 Q5WF26_BACSK Putative uncharacterized protein Length = 209 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 129/203 (63%), Gaps = 7/203 (3%) Query: 9 LGPLQTNAYLLTGADPGRGVIIDPGANPAALLRAAQEMEI--EAVLLTHAHFDHIAGLDE 66 LGPLQTNAY+L + V+ DPG + AA + +E ++ +A+LLTHAHFDHI L+E Sbjct: 7 LGPLQTNAYVLYN-EKKEAVLFDPGGDGAAFVNWIREQKLTPQAILLTHAHFDHIGALEE 65 Query: 67 IRRAKKCPVYLHTLESEWLGSPKLNGSLMWPDVTPPISTEPAEYDLADGQVLNLLGLTFR 126 +R+A CPVYLH E +WL P NGS PI T+PA++ L D L + +F+ Sbjct: 66 VRQAFACPVYLHEAEKQWLLDPLKNGSARMG--RQPIKTKPADHLLKDEGTLKVGSFSFK 123 Query: 127 VMHTPGHSPGSVSFLCGSD--LFSGDVLFKLGVGRTDLTGGRERDLIDSIRNKLYRLDEE 184 + HTPGHSPGSVS+ + +FSGD LF+ G+GRTDL GG L+ SI NKL L EE Sbjct: 124 LFHTPGHSPGSVSYYVADENIVFSGDALFQQGIGRTDLFGGNHELLVQSIHNKLLTLPEE 183 Query: 185 VRVFPGHGPRTTIGFERQCNPYV 207 V GHGP TTIG E NP++ Sbjct: 184 TIVASGHGPLTTIGQEMDHNPFL 206 >C2QYB4.1 C2QYB4_BACCE Metallo-beta-lactamase Length = 239 Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 9 LGPLQTNAYLLTGADPGRGVIIDPGANPAALLRAAQEMEIE--AVLLTHAHFDHIAGLDE 66 LGPLQTNAY+LT D +I DPG L+ QE +++ AVLLTHAHFDHI +D Sbjct: 38 LGPLQTNAYILTN-DQNECIIFDPGHEGEKLVTYLQEEQLKPLAVLLTHAHFDHIGAVDA 96 Query: 67 IRRAKKCPVYLHTLESEWLGSPKLNGSLMWPDVTPPISTEPAEYDLADGQVLNLLGLTFR 126 +R A PVY+H E +WLG +NGS ++ + I+ +PA++ + L + F Sbjct: 97 VRDAFHIPVYVHKEEEDWLGDATVNGSQIFM-MNRSITAKPADHIIDAEGTLAIGSFNFE 155 Query: 127 VMHTPGHSPGSVSFLC--GSDLFSGDVLFKLGVGRTDLTGGRERDLIDSIRNKLYRLDEE 184 + TPGHSPGS+S+ C S +FSGDVLF++ +GRTDL GG +LI SI KL+ L +E Sbjct: 156 IFETPGHSPGSISYYCKEASAVFSGDVLFQMSIGRTDLPGGSFAELIGSIEEKLFVLPDE 215 Query: 185 VRVFPGHGPRTTIGFERQCNPYV 207 V GHGP T+IGFE++ NP++ Sbjct: 216 TAVLCGHGPETSIGFEKENNPFL 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,414,914,429 Number of extensions: 60491957 Number of successful extensions: 161299 Number of sequences better than 1.0e-05: 2775 Number of HSP's gapped: 157225 Number of HSP's successfully gapped: 2778 Length of query: 209 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 79 Effective length of database: 1,835,964,253 Effective search space: 145041175987 Effective search space used: 145041175987 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)