BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0013.p
         (66 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDH2.1 B3KDH2_9BACI Putative uncharacterized protein                 82   2e-14
B1HXI1.1 B1HXI1_LYSSC YxlE                                             69   2e-10
P94373.1 P94373_BACSU YxlE protein                                     65   2e-09
Q65DE5.1 Q65DE5_BACLD YxlE                                             59   2e-07

>B3KDH2.1 B3KDH2_9BACI Putative uncharacterized protein
          Length = 64

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 51/62 (82%), Gaps = 2/62 (3%)

Query: 6  EIKWGLIWPLLALQVLLAVIGLVSLGKAE--QTRGPKWLWVIILIFGNLLGSVAYFTVGR 63
          +I WGLIWP+LALQ +LAV GL+SL +AE    RGP+W+WV+I++ GN+LGS+AYF  GR
Sbjct: 2  DINWGLIWPILALQAILAVTGLISLFRAEPANIRGPRWMWVLIILLGNILGSIAYFIAGR 61

Query: 64 KD 65
          ++
Sbjct: 62 RE 63


>B1HXI1.1 B1HXI1_LYSSC YxlE
          Length = 67

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 3  VMEE---IKWGLIWPLLALQVLLAVIGLVSLGKAEQTRGPKWLWVIILIFGNLLGSVAYF 59
          +MEE   + W +I PL+ +Q++L ++ L+ L K   T GPK LWV I++F N++GS+AYF
Sbjct: 1  MMEELAKVPWAVIAPLIVVQLILMIVALIDLRKTHATNGPKILWVFIILFTNIIGSIAYF 60

Query: 60 TVGRKD 65
           VGRK 
Sbjct: 61 IVGRKQ 66


>P94373.1 P94373_BACSU YxlE protein
          Length = 62

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 6  EIKWGLIWPLLALQVLLAVIGLVSLGKAEQTRGPKWLWVIILIFGNLLGSVAYFTVGRKD 65
           I W +I PL+ LQ+ LAV  L+S  K E+T GPKW+W  I++  N++G + +FTVGRK 
Sbjct: 2  NISWEMILPLIVLQLALAVFALISCIKEERTNGPKWMWAAIIVCINIIGPILFFTVGRKQ 61

Query: 66 N 66
           
Sbjct: 62 R 62


>Q65DE5.1 Q65DE5_BACLD YxlE
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 6  EIKWGLIWPLLALQVLLAVIGLVSLGKAEQTRGPKWLWVIILIFGNLLGSVAYFTVGRK 64
          +I W L+ P + L  +LAV  LVS  K E+T GPKW+W++I+   + +G V+YF +G+K
Sbjct: 5  DIPWALLAPFIVLSFILAVSALVSCIKQEKTNGPKWMWILIIFGISFVGPVSYFIIGKK 63


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.144    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 391,805,604
Number of extensions: 11960692
Number of successful extensions: 53821
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 53832
Number of HSP's successfully gapped: 12
Length of query: 66
Length of database: 3,060,696,203
Length adjustment: 38
Effective length of query: 28
Effective length of database: 2,702,697,633
Effective search space: 75675533724
Effective search space used: 75675533724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)