BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0009.p
         (95 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDG8.1 B3KDG8_9BACI Glutamyl-tRNA(Gln) amidotransferase, C sub...   135   2e-30
B1DHA5.1 B1DHA5_9BACL Glutamyl-tRNA(Gln) amidotransferase, C sub...   130   6e-29
C0Z4E3.1 C0Z4E3_BREBN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotrans...   110   3e-23
C3J674.1 C3J674_9BACI Glutamyl-tRNA(Gln) amidotransferase, C sub...   110   5e-23
B7YDH6.1 B7YDH6_9BACI Glutamyl-tRNA(Gln) amidotransferase, C sub...   110   5e-23

>B3KDG8.1 B3KDG8_9BACI Glutamyl-tRNA(Gln) amidotransferase, C subunit
          Length = 95

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 80/95 (84%)

Query: 1  MSITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSN 60
          MSIT  DVQHVAKLARL+L+PEEE   T Q+NAILQYAEKLNELDT+ V+PTTHVL +SN
Sbjct: 1  MSITDKDVQHVAKLARLNLTPEEEQMFTGQLNAILQYAEKLNELDTDGVEPTTHVLHLSN 60

Query: 61 VMRDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
          VMR+D V+ESL  E+ LLNAP++ED   KVPAVLE
Sbjct: 61 VMREDEVRESLPIEKVLLNAPDEEDDQIKVPAVLE 95


>B1DHA5.1 B1DHA5_9BACL Glutamyl-tRNA(Gln) amidotransferase, C subunit
          Length = 95

 Score =  130 bits (326), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 80/95 (84%)

Query: 1  MSITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSN 60
          MSIT+ DV+HVA LARL LS EE+ + T Q+NAIL+YAEKL+ LDT+NV+PT+HVL ++N
Sbjct: 1  MSITIKDVEHVANLARLELSNEEKEQFTGQLNAILKYAEKLDSLDTDNVEPTSHVLPITN 60

Query: 61 VMRDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
          VMR+D+ +ESL  E+ LLNAP++EDG  KVPAVLE
Sbjct: 61 VMREDITRESLPIEKVLLNAPDEEDGQIKVPAVLE 95


>C0Z4E3.1 C0Z4E3_BREBN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase
          subunit C EC=6.3.5.-
          Length = 96

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 70/94 (74%)

Query: 2  SITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSNV 61
          +IT  +V+HVA LARL L+ EE  + T+ +NAIL +A KLNELDT N++PT+H   V NV
Sbjct: 3  AITRKEVEHVANLARLQLTEEEAERYTKDLNAILDFAAKLNELDTSNIEPTSHATDVKNV 62

Query: 62 MRDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
          MR+DV + SL +E+ L NAP+ EDG FKVPAV E
Sbjct: 63 MREDVNRPSLPREDVLKNAPDHEDGQFKVPAVFE 96


>C3J674.1 C3J674_9BACI Glutamyl-tRNA(Gln) amidotransferase, C subunit
          Length = 96

 Score =  110 bits (275), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 72/93 (77%)

Query: 3  ITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSNVM 62
          I++  V+HVA LARL ++ EE    T+Q++AI+ +AE+LNELDTENV PT+HVL + NVM
Sbjct: 4  ISIEQVKHVADLARLAITDEEAEMFTKQLDAIITFAEQLNELDTENVPPTSHVLDMRNVM 63

Query: 63 RDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
          R+D+ +  L +EE L NAP+ +DG F+VPA+LE
Sbjct: 64 REDIPEPGLPREEVLKNAPDQQDGQFRVPAILE 96


>B7YDH6.1 B7YDH6_9BACI Glutamyl-tRNA(Gln) amidotransferase, C subunit
          Length = 96

 Score =  110 bits (275), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 72/93 (77%)

Query: 3  ITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSNVM 62
          I++  V+HVA LARL ++ EE    T+Q++AI+ +AE+LNELDTENV PT+HVL + NVM
Sbjct: 4  ISIEQVKHVADLARLAITDEEAEMFTKQLDAIITFAEQLNELDTENVPPTSHVLDMRNVM 63

Query: 63 RDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
          R+D+ +  L +EE L NAP+ +DG F+VPA+LE
Sbjct: 64 REDIPEPGLPREEVLKNAPDQQDGQFRVPAILE 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.125    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 517,773,442
Number of extensions: 16377580
Number of successful extensions: 54793
Number of sequences better than 1.0e-05: 971
Number of HSP's gapped: 54683
Number of HSP's successfully gapped: 971
Length of query: 95
Length of database: 3,060,696,203
Length adjustment: 64
Effective length of query: 31
Effective length of database: 2,457,751,243
Effective search space: 76190288533
Effective search space used: 76190288533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)