BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0008.p (472 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDG7.1 B3KDG7_9BACI Glutamyl-tRNA(Gln) amidotransferase, A sub... 766 0.0 B1DHA6.1 B1DHA6_9BACL Glutamyl-tRNA(Gln) amidotransferase, A sub... 712 0.0 B7GFW3.1 GATA_ANOFW Glutamyl-tRNA(Gln) amidotransferase subunit ... 695 0.0 B4BRC1.1 B4BRC1_9BACI Glutamyl-tRNA(Gln) amidotransferase, A sub... 684 0.0 A4IJZ2.1 GATA_GEOTN Glutamyl-tRNA(Gln) amidotransferase subunit ... 684 0.0 >B3KDG7.1 B3KDG7_9BACI Glutamyl-tRNA(Gln) amidotransferase, A subunit EC=3.5.1.4 Length = 485 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/471 (77%), Positives = 413/471 (87%) Query: 2 LRSKEISVGELTEESLAAIAERDGKVHAFLTLNEEGARASARALDDKLASGAARGLLFGL 61 L++KE+SV +L +++ I+ER+ +V AF+TL+EEGAR SA+ALDDKLA+G RGLLFGL Sbjct: 15 LQNKELSVTDLVDQAFTRISEREDRVKAFITLDEEGARTSAKALDDKLAAGETRGLLFGL 74 Query: 62 PAGIKDNIVTKGLRTTCASQFLSNFQPIYDATVVTKLRQADAVTVGKLNMDEFAMGGSNE 121 P GIKDNIVT+GLRTTCASQFLSNF P+YDATVV KLR AD VT+GKLNMDEFAMGGSNE Sbjct: 75 PVGIKDNIVTEGLRTTCASQFLSNFTPVYDATVVGKLRAADTVTIGKLNMDEFAMGGSNE 134 Query: 122 NSSFGPVRNPWDVERVPXXXXXXXXXXXXXXEVLFTLGSDTGGSIRQPASYCGVVGLKPT 181 NSSF PVRNPWD++RVP E F LGSDTGGSIRQPASYCGVVGLKPT Sbjct: 135 NSSFYPVRNPWDLDRVPGGSSGGSAAAVAAGEAYFALGSDTGGSIRQPASYCGVVGLKPT 194 Query: 182 YGLVSRYGLVAFASSLDQIGPITRNVEDSAYVLQAIAGYDAQDSTSANVDIPDYLSALTG 241 YGLVSR+GLVAFASSLDQIGP+T+NVEDSAYVLQAIAGYD DSTSA VD+PDYLSAL+G Sbjct: 195 YGLVSRFGLVAFASSLDQIGPLTKNVEDSAYVLQAIAGYDPMDSTSAKVDVPDYLSALSG 254 Query: 242 DISGLRIAVPKEYIGEGVDASVRDTVLSALKVLESLGAVWEEVSLPHTEYAVATYYXXXX 301 D++GLRIAVPKEY+GEGVDA V++TVL+ALKVLESLGA W+EVSLPHT+YAVATYY Sbjct: 255 DVAGLRIAVPKEYLGEGVDAEVKETVLNALKVLESLGATWDEVSLPHTDYAVATYYLLAS 314 Query: 302 XXXXXXXXRFDGVRYGVRADDGGGLLDLYHNSRSEGFGAEVKRRIMLGTYALSSGYYDAY 361 RFDGVRYGVR+D+ G L+DLYH SRS+GFG EVKRRIMLGTYALSSGYYDAY Sbjct: 315 SEASSNLARFDGVRYGVRSDNAGSLIDLYHESRSQGFGDEVKRRIMLGTYALSSGYYDAY 374 Query: 362 YLKAQKVRTLIKQDFDDVFQKYDVVIGPTAPTTAFKLGSQIEDPLTMYLNDILTIPVSLA 421 YLKAQK RTLIKQDFD VF++YDV+IGPTAPTTAFKLG+Q++DPLTMYLNDILTIPVSLA Sbjct: 375 YLKAQKARTLIKQDFDKVFEQYDVIIGPTAPTTAFKLGTQVDDPLTMYLNDILTIPVSLA 434 Query: 422 GIPAVSIPCGFAEGLPVGLQIIGKEFDESTVLRVAHAFEQHTDHHKQLPQL 472 G+PAVS+PCGFA+GLPVG+QIIGK FDESTVLRVAHA+EQ+TDHHK+ P+L Sbjct: 435 GVPAVSVPCGFADGLPVGMQIIGKAFDESTVLRVAHAYEQNTDHHKRRPEL 485 >B1DHA6.1 B1DHA6_9BACL Glutamyl-tRNA(Gln) amidotransferase, A subunit EC=3.5.1.4 Length = 486 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/471 (71%), Positives = 387/471 (82%) Query: 2 LRSKEISVGELTEESLAAIAERDGKVHAFLTLNEEGARASARALDDKLASGAARGLLFGL 61 L +KE++V +L + S IAE D + AFLTLNEE AR A +LD +L G RGLLFGL Sbjct: 15 LNNKELTVSDLVDASYRRIAETDETIKAFLTLNEENARRQADSLDKQLLEGGERGLLFGL 74 Query: 62 PAGIKDNIVTKGLRTTCASQFLSNFQPIYDATVVTKLRQADAVTVGKLNMDEFAMGGSNE 121 P+G+KDNIVT+GL TTCASQFLSN+ PIYDAT V+KL+ A +VT+GKLNMDEFAMGGSNE Sbjct: 75 PSGVKDNIVTEGLLTTCASQFLSNYNPIYDATTVSKLKSAQSVTIGKLNMDEFAMGGSNE 134 Query: 122 NSSFGPVRNPWDVERVPXXXXXXXXXXXXXXEVLFTLGSDTGGSIRQPASYCGVVGLKPT 181 NSS+ P RNPW+ E VP +V F+LGSDTGGSIRQPA+YCG+VGLKPT Sbjct: 135 NSSYYPTRNPWNPEYVPGGSSGGSAASVAAGQVYFSLGSDTGGSIRQPAAYCGIVGLKPT 194 Query: 182 YGLVSRYGLVAFASSLDQIGPITRNVEDSAYVLQAIAGYDAQDSTSANVDIPDYLSALTG 241 YGLVSR+GLVAFASSLDQIGP+T+NVEDSAYVLQAIAGYD +DSTSANVDIPDY SALTG Sbjct: 195 YGLVSRFGLVAFASSLDQIGPLTKNVEDSAYVLQAIAGYDEKDSTSANVDIPDYTSALTG 254 Query: 242 DISGLRIAVPKEYIGEGVDASVRDTVLSALKVLESLGAVWEEVSLPHTEYAVATYYXXXX 301 D+ GLRI VP+EY+GEG+D V++ V+ ALK ES+GA WEEVSLPHTEYA+ATYY Sbjct: 255 DVKGLRIGVPREYLGEGIDPKVKEAVMQALKTFESMGATWEEVSLPHTEYAIATYYLLAS 314 Query: 302 XXXXXXXXRFDGVRYGVRADDGGGLLDLYHNSRSEGFGAEVKRRIMLGTYALSSGYYDAY 361 RFDGVRYGVRAD+ L+DLY SRS+GFG EVKRRIMLGTYALSSGYYDAY Sbjct: 315 SEASSNLARFDGVRYGVRADNPENLIDLYRKSRSQGFGPEVKRRIMLGTYALSSGYYDAY 374 Query: 362 YLKAQKVRTLIKQDFDDVFQKYDVVIGPTAPTTAFKLGSQIEDPLTMYLNDILTIPVSLA 421 YLKAQKVRTLIKQDFD+VF +YD++IGPTAPTTAFK+G Q+ DPLTMYLNDI TIPVSLA Sbjct: 375 YLKAQKVRTLIKQDFDNVFNQYDIIIGPTAPTTAFKIGEQVGDPLTMYLNDICTIPVSLA 434 Query: 422 GIPAVSIPCGFAEGLPVGLQIIGKEFDESTVLRVAHAFEQHTDHHKQLPQL 472 GIPA+S+PCG A+G+P+GLQIIGK FDESTVLR AHAFEQ T+ HK PQL Sbjct: 435 GIPAISVPCGTADGMPIGLQIIGKAFDESTVLRAAHAFEQQTEFHKLRPQL 485 >B7GFW3.1 GATA_ANOFW Glutamyl-tRNA(Gln) amidotransferase subunit A EC=6.3.5.- Length = 485 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/472 (71%), Positives = 376/472 (79%) Query: 1 MLRSKEISVGELTEESLAAIAERDGKVHAFLTLNEEGARASARALDDKLASGAARGLLFG 60 +L KEISV +L +ES I E D KV AFLTLNEE ARA A+ LD+KLA+ GLLFG Sbjct: 14 LLHKKEISVSDLVDESFKRIHEVDEKVQAFLTLNEEQARAKAKELDEKLATEKEFGLLFG 73 Query: 61 LPAGIKDNIVTKGLRTTCASQFLSNFQPIYDATVVTKLRQADAVTVGKLNMDEFAMGGSN 120 +P GIKDNIVTKGLRTTCAS+ L NF PIYDATVV +L +ADAVTVGKLNMDEFAMG S Sbjct: 74 MPIGIKDNIVTKGLRTTCASKILYNFDPIYDATVVERLNEADAVTVGKLNMDEFAMGSST 133 Query: 121 ENSSFGPVRNPWDVERVPXXXXXXXXXXXXXXEVLFTLGSDTGGSIRQPASYCGVVGLKP 180 ENS F RNPWD+ERVP EV F LGSDTGGSIRQPA++CGVVGLKP Sbjct: 134 ENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKP 193 Query: 181 TYGLVSRYGLVAFASSLDQIGPITRNVEDSAYVLQAIAGYDAQDSTSANVDIPDYLSALT 240 TYG VSRYGLVAFASSLDQIGPITR VED+AY+LQ I+G D DSTSANVD+PDY+SALT Sbjct: 194 TYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQVISGLDPMDSTSANVDVPDYVSALT 253 Query: 241 GDISGLRIAVPKEYIGEGVDASVRDTVLSALKVLESLGAVWEEVSLPHTEYAVATYYXXX 300 GDI GL+IAVPKEY+GEGV VR +VL ALKVLE LGA WEEVSLPH++YA+ATYY Sbjct: 254 GDIQGLKIAVPKEYLGEGVSEEVRQSVLDALKVLEGLGATWEEVSLPHSKYALATYYLLA 313 Query: 301 XXXXXXXXXRFDGVRYGVRADDGGGLLDLYHNSRSEGFGAEVKRRIMLGTYALSSGYYDA 360 RFDGVRYG R D L+++Y +RSEGFG EVKRRIMLGT+ALSSGYYDA Sbjct: 314 SSEASANLARFDGVRYGYRTDHAKNLMEMYKQTRSEGFGNEVKRRIMLGTFALSSGYYDA 373 Query: 361 YYLKAQKVRTLIKQDFDDVFQKYDVVIGPTAPTTAFKLGSQIEDPLTMYLNDILTIPVSL 420 YY KAQKVRTLIKQDF++VF+KYDV+IGPT PT AFK+G + DPLTMY NDILTIPV+L Sbjct: 374 YYKKAQKVRTLIKQDFENVFEKYDVIIGPTTPTPAFKIGEKTSDPLTMYANDILTIPVNL 433 Query: 421 AGIPAVSIPCGFAEGLPVGLQIIGKEFDESTVLRVAHAFEQHTDHHKQLPQL 472 AG+P +SIPCGF GLPVGLQIIGK FDEST+ RVAHAFEQ TD+HKQ P L Sbjct: 434 AGVPGISIPCGFVNGLPVGLQIIGKHFDESTIYRVAHAFEQATDYHKQKPTL 485 >B4BRC1.1 B4BRC1_9BACI Glutamyl-tRNA(Gln) amidotransferase, A subunit EC=3.5.1.4 Length = 485 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/472 (69%), Positives = 378/472 (80%) Query: 1 MLRSKEISVGELTEESLAAIAERDGKVHAFLTLNEEGARASARALDDKLASGAARGLLFG 60 +L+ KE+S+ +L +ES I E + KV AFLTLNEE ARA A+ LDDKLA G LFG Sbjct: 14 LLQKKEVSISDLVDESYRRIGEVEEKVQAFLTLNEEQARAKAKELDDKLAKGEETNPLFG 73 Query: 61 LPAGIKDNIVTKGLRTTCASQFLSNFQPIYDATVVTKLRQADAVTVGKLNMDEFAMGGSN 120 LP GIKDNIVTKGLRTTCAS+ L NF PIYDATV+ +L A A+T+GKLNMDEFAMG S Sbjct: 74 LPIGIKDNIVTKGLRTTCASKILYNFDPIYDATVMERLNAAGAITIGKLNMDEFAMGSST 133 Query: 121 ENSSFGPVRNPWDVERVPXXXXXXXXXXXXXXEVLFTLGSDTGGSIRQPASYCGVVGLKP 180 ENS F RNPWD+ERVP EV F+LGSDTGGSIRQPA++CGVVGLKP Sbjct: 134 ENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPAAFCGVVGLKP 193 Query: 181 TYGLVSRYGLVAFASSLDQIGPITRNVEDSAYVLQAIAGYDAQDSTSANVDIPDYLSALT 240 TYG VSR+GLVAFASSLDQIGPITR VED+AY+LQ IAG D DSTSAN+D+P+Y+ ALT Sbjct: 194 TYGRVSRFGLVAFASSLDQIGPITRTVEDNAYLLQVIAGVDPMDSTSANIDVPNYVEALT 253 Query: 241 GDISGLRIAVPKEYIGEGVDASVRDTVLSALKVLESLGAVWEEVSLPHTEYAVATYYXXX 300 GDI GL+IAVPKEY+GEGV VR +VL+AL VLE LGA WEEVSLPH++YA+ATYY Sbjct: 254 GDIKGLKIAVPKEYLGEGVAEEVRQSVLAALSVLEKLGATWEEVSLPHSKYALATYYLLA 313 Query: 301 XXXXXXXXXRFDGVRYGVRADDGGGLLDLYHNSRSEGFGAEVKRRIMLGTYALSSGYYDA 360 RFDGVRYG R D+ L+D+Y +RSEGFG+EVKRRIMLGT+ALSSGYYDA Sbjct: 314 SSEASANLARFDGVRYGYRTDNAKNLIDMYKQTRSEGFGSEVKRRIMLGTFALSSGYYDA 373 Query: 361 YYLKAQKVRTLIKQDFDDVFQKYDVVIGPTAPTTAFKLGSQIEDPLTMYLNDILTIPVSL 420 YY KAQKVRTLIK+DF++VF++YDV+IGPT PT AFK+G + DPLTMY+NDILTIPV+L Sbjct: 374 YYKKAQKVRTLIKRDFENVFEQYDVIIGPTTPTPAFKIGEKTSDPLTMYMNDILTIPVNL 433 Query: 421 AGIPAVSIPCGFAEGLPVGLQIIGKEFDESTVLRVAHAFEQHTDHHKQLPQL 472 AG+PA+S+PCGF +GLPVGLQIIGK FDESTV RVAHAFEQ TD+HKQ P L Sbjct: 434 AGVPAISVPCGFVDGLPVGLQIIGKHFDESTVYRVAHAFEQATDYHKQKPVL 485 >A4IJZ2.1 GATA_GEOTN Glutamyl-tRNA(Gln) amidotransferase subunit A EC=6.3.5.- Length = 485 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/472 (69%), Positives = 378/472 (80%) Query: 1 MLRSKEISVGELTEESLAAIAERDGKVHAFLTLNEEGARASARALDDKLASGAARGLLFG 60 +L+ KE+S+ +L +ES I E + KV AFLTLNEE ARA A+ LDDKLA G LFG Sbjct: 14 LLQKKEVSISDLVDESYRRIGEVEEKVQAFLTLNEEQARAKAKELDDKLAKGEETNPLFG 73 Query: 61 LPAGIKDNIVTKGLRTTCASQFLSNFQPIYDATVVTKLRQADAVTVGKLNMDEFAMGGSN 120 LP GIKDNIVTKGLRTTCAS+ L NF PIYDATV+ +L A A+T+GKLNMDEFAMG S Sbjct: 74 LPIGIKDNIVTKGLRTTCASKILYNFDPIYDATVMERLNAAGAITIGKLNMDEFAMGSST 133 Query: 121 ENSSFGPVRNPWDVERVPXXXXXXXXXXXXXXEVLFTLGSDTGGSIRQPASYCGVVGLKP 180 ENS F RNPWD+ERVP EV F+LGSDTGGSIRQPA++CGVVGLKP Sbjct: 134 ENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPAAFCGVVGLKP 193 Query: 181 TYGLVSRYGLVAFASSLDQIGPITRNVEDSAYVLQAIAGYDAQDSTSANVDIPDYLSALT 240 TYG VSR+GLVAFASSLDQIGPITR VED+AY+LQ IAG D DSTSAN+D+P+Y+ ALT Sbjct: 194 TYGRVSRFGLVAFASSLDQIGPITRTVEDNAYLLQVIAGVDPMDSTSANIDVPNYVEALT 253 Query: 241 GDISGLRIAVPKEYIGEGVDASVRDTVLSALKVLESLGAVWEEVSLPHTEYAVATYYXXX 300 GDI GL+IAVPKEY+GEGV VR +VL+AL VLE LGA WEEVSLPH++YA+ATYY Sbjct: 254 GDIKGLKIAVPKEYLGEGVAEEVRQSVLAALSVLEKLGATWEEVSLPHSKYALATYYLLA 313 Query: 301 XXXXXXXXXRFDGVRYGVRADDGGGLLDLYHNSRSEGFGAEVKRRIMLGTYALSSGYYDA 360 RFDGVRYG R D+ L+D+Y +RSEGFG+EVKRRIMLGT+ALSSGYYDA Sbjct: 314 SSEASANLARFDGVRYGYRTDNAKNLIDMYKQTRSEGFGSEVKRRIMLGTFALSSGYYDA 373 Query: 361 YYLKAQKVRTLIKQDFDDVFQKYDVVIGPTAPTTAFKLGSQIEDPLTMYLNDILTIPVSL 420 YY KAQKVRTLIK+DF++VF++YDV+IGPT PT AFK+G + DPLTMY+NDILTIPV+L Sbjct: 374 YYKKAQKVRTLIKRDFENVFEQYDVIIGPTTPTPAFKIGEKTSDPLTMYMNDILTIPVNL 433 Query: 421 AGIPAVSIPCGFAEGLPVGLQIIGKEFDESTVLRVAHAFEQHTDHHKQLPQL 472 AG+PA+S+PCGF +GLPVGLQIIGK FDESTV RVAHAFEQ TD+HKQ P L Sbjct: 434 AGVPAISVPCGFVDGLPVGLQIIGKHFDESTVYRVAHAFEQATDYHKQKPVL 485 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,625,236,916 Number of extensions: 106373336 Number of successful extensions: 267212 Number of sequences better than 1.0e-05: 4453 Number of HSP's gapped: 257498 Number of HSP's successfully gapped: 4770 Length of query: 472 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 333 Effective length of database: 1,751,175,118 Effective search space: 583141314294 Effective search space used: 583141314294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)