BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0007.p (477 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDG6.1 B3KDG6_9BACI Glutamyl-tRNA(Gln) amidotransferase, B sub... 841 0.0 B1DHA7.1 B1DHA7_9BACL Glutamyl-tRNA(Gln) amidotransferase, B sub... 789 0.0 C0Z4E5.1 GATB_BREBN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 726 0.0 A8VVB7.1 A8VVB7_9BACI Peroxiredoxin EC=1.11.1.15 655 0.0 C5D4K7.1 C5D4K7_9BACI Glutamyl-tRNA(Gln) amidotransferase, B sub... 642 0.0 >B3KDG6.1 B3KDG6_9BACI Glutamyl-tRNA(Gln) amidotransferase, B subunit Length = 479 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/475 (84%), Positives = 431/475 (90%) Query: 2 AKYETVIGLEVHVELHTKSKIFCGCSTEFGAPPNTHTCPVCLGHPGVLPVLNRQAVEYAM 61 +KYETVIGLEVHVELHT SKIFCGCST FGAPPNTHTCP+CLGHPGVLPVLNRQAVEYA+ Sbjct: 4 SKYETVIGLEVHVELHTHSKIFCGCSTAFGAPPNTHTCPICLGHPGVLPVLNRQAVEYAI 63 Query: 62 KAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGLNGWIDIEVDGQTKRIGITR 121 KAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIG NGWIDIEVDG+TKRIGITR Sbjct: 64 KAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGENGWIDIEVDGKTKRIGITR 123 Query: 122 LHLEEDAGKLTHVDGGFASLVDFNRVGTPLIEIVSEPDLRSPEEARAYLEKIRAIMQYCD 181 LHLEEDAGKLTHVDGG+ASLVDFNRVGTPL+EIVSEP++ +PEEA+AYLEK+RAIMQYCD Sbjct: 124 LHLEEDAGKLTHVDGGYASLVDFNRVGTPLVEIVSEPEISTPEEAKAYLEKMRAIMQYCD 183 Query: 182 VSDVKMEEGSMRCDANISLRPEGQAEFGIRAELKNMNSFRGVLRGLEYEQFRQSEILDDG 241 VSDVKMEEGS+RCDANISLRP GQ EFG +AELKNMNSFRGV RGLEYEQFRQ+EILD+G Sbjct: 184 VSDVKMEEGSLRCDANISLRPWGQKEFGTKAELKNMNSFRGVQRGLEYEQFRQAEILDEG 243 Query: 242 GVVVQETRRWDEAQGKTLSMRGKEEAHDYRYFPDPDLIVLHIDDAWKESIRASIPELPDA 301 GV+VQETRRWDEAQ KT SMRGKE+AHDYRYFPDPDL+ +HI + WKE++RA+IPELPDA Sbjct: 244 GVIVQETRRWDEAQAKTFSMRGKEQAHDYRYFPDPDLVSVHISEEWKEAVRATIPELPDA 303 Query: 302 RKSRYSTEYGLTAYDAGVLTSSKPLADFFEGSLAYTKDAKAVANWMMXXXXXXXXXXXXX 361 RK+RY++EYGL YDA V+TSSK LADFFE SL+YTKDAK+V+NW+M Sbjct: 304 RKARYASEYGLPDYDAAVITSSKLLADFFEDSLSYTKDAKSVSNWIMGDLLGYLNSNNLE 363 Query: 362 XPQVKITPQGLGEMIGLIAGGTISSKIAKTVFKEMLESGKLPAAIVEEKGLVQISDEGAI 421 +VKIT QGLGEMIGLI GTISSKIAKTVFKEMLESGKLPA IVEEKGLVQISDEGAI Sbjct: 364 LSEVKITGQGLGEMIGLIEKGTISSKIAKTVFKEMLESGKLPAQIVEEKGLVQISDEGAI 423 Query: 422 KQIVEAVVAANPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPGLVNTLLAEVLN 476 K IVE VVA NPQSVEDYKAGKQKAIGFLVGQVMKESKGKANP L N LL EVLN Sbjct: 424 KGIVEQVVANNPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPALANKLLVEVLN 478 >B1DHA7.1 B1DHA7_9BACL Glutamyl-tRNA(Gln) amidotransferase, B subunit Length = 480 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/476 (77%), Positives = 418/476 (87%) Query: 2 AKYETVIGLEVHVELHTKSKIFCGCSTEFGAPPNTHTCPVCLGHPGVLPVLNRQAVEYAM 61 +YETV+GLEVHVELHT SKIFCGCST FGAP NTHTCPVCLGHPGVLPVLN+QAVEYAM Sbjct: 5 TQYETVVGLEVHVELHTNSKIFCGCSTAFGAPANTHTCPVCLGHPGVLPVLNKQAVEYAM 64 Query: 62 KAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGLNGWIDIEVDGQTKRIGITR 121 KAAMALNC I D+SKFDRKNYFYPDSPKAYQISQ+DQPIG NGWIDIEV+G+TKRIGITR Sbjct: 65 KAAMALNCEIADISKFDRKNYFYPDSPKAYQISQFDQPIGENGWIDIEVNGETKRIGITR 124 Query: 122 LHLEEDAGKLTHVDGGFASLVDFNRVGTPLIEIVSEPDLRSPEEARAYLEKIRAIMQYCD 181 LHLEEDAGKLTHVDGG+ASLVDFNRVGTPL+EIVSEPD+R+PEEA+AYLEK++AIM YC+ Sbjct: 125 LHLEEDAGKLTHVDGGYASLVDFNRVGTPLVEIVSEPDIRTPEEAKAYLEKLKAIMLYCE 184 Query: 182 VSDVKMEEGSMRCDANISLRPEGQAEFGIRAELKNMNSFRGVLRGLEYEQFRQSEILDDG 241 VSDVKMEEGS+RCDANISLRP GQ + G RAELKNMNSFRGV RGLEYEQ RQ+EIL++G Sbjct: 185 VSDVKMEEGSLRCDANISLRPYGQEKLGTRAELKNMNSFRGVQRGLEYEQIRQAEILNEG 244 Query: 242 GVVVQETRRWDEAQGKTLSMRGKEEAHDYRYFPDPDLIVLHIDDAWKESIRASIPELPDA 301 G+VVQETRR+D+ GKT SMRGKEE+HDYRYFPDPDL+ L+I WK+ +RASIPELPDA Sbjct: 245 GLVVQETRRFDDTLGKTFSMRGKEESHDYRYFPDPDLVRLNISQEWKDRVRASIPELPDA 304 Query: 302 RKSRYSTEYGLTAYDAGVLTSSKPLADFFEGSLAYTKDAKAVANWMMXXXXXXXXXXXXX 361 RK+RY+++YGL +YDA V+TSSK LADFFE SL YTKDAKAV+NW+M Sbjct: 305 RKARYTSDYGLPSYDAEVITSSKKLADFFEESLNYTKDAKAVSNWIMGDLLGYLNANSLE 364 Query: 362 XPQVKITPQGLGEMIGLIAGGTISSKIAKTVFKEMLESGKLPAAIVEEKGLVQISDEGAI 421 +VKIT QGLGEMIGL+ GTISSKIAKTVFK MLESGKLP IVEE+GLVQISDEGA+ Sbjct: 365 LSEVKITGQGLGEMIGLLEKGTISSKIAKTVFKAMLESGKLPQQIVEEQGLVQISDEGAL 424 Query: 422 KQIVEAVVAANPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPGLVNTLLAEVLNS 477 +V+ ++ ANPQSVED+KAGK KAIGFLVGQ+MKE+KGKANP LVN LL E L + Sbjct: 425 VAVVDQIIQANPQSVEDFKAGKDKAIGFLVGQIMKETKGKANPALVNKLLLERLKA 480 >C0Z4E5.1 GATB_BREBN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B EC=6.3.5.- Length = 478 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/477 (70%), Positives = 396/477 (83%) Query: 1 MAKYETVIGLEVHVELHTKSKIFCGCSTEFGAPPNTHTCPVCLGHPGVLPVLNRQAVEYA 60 M+KYETVIGLEVH EL T SKIFCGC TEFGAPPNTHTCP+CLGHPGVLPV N+QAVE+A Sbjct: 1 MSKYETVIGLEVHAELSTNSKIFCGCPTEFGAPPNTHTCPICLGHPGVLPVTNKQAVEFA 60 Query: 61 MKAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGLNGWIDIEVDGQTKRIGIT 120 MKAA+ALNC I +KFDRKNYFYPDSPKAYQISQ+DQPIG NGWIDIEV+G+TKRIGIT Sbjct: 61 MKAALALNCEISRETKFDRKNYFYPDSPKAYQISQFDQPIGYNGWIDIEVNGETKRIGIT 120 Query: 121 RLHLEEDAGKLTHVDGGFASLVDFNRVGTPLIEIVSEPDLRSPEEARAYLEKIRAIMQYC 180 RLHLEEDAGKLTH D G SLVDFNRVG PL+EIVSEPD+R+PEEARAYLEK++AI+QY Sbjct: 121 RLHLEEDAGKLTHSDFGGESLVDFNRVGVPLVEIVSEPDIRTPEEARAYLEKLKAIIQYT 180 Query: 181 DVSDVKMEEGSMRCDANISLRPEGQAEFGIRAELKNMNSFRGVLRGLEYEQFRQSEILDD 240 +VSDV+ME+GS+RCDAN+S+RP GQ EFG +AELKNMNSFR V GLEYE RQ+E++ Sbjct: 181 EVSDVRMEQGSLRCDANVSIRPYGQEEFGTKAELKNMNSFRNVQMGLEYEVLRQTEVVSS 240 Query: 241 GGVVVQETRRWDEAQGKTLSMRGKEEAHDYRYFPDPDLIVLHIDDAWKESIRASIPELPD 300 GG VVQETRRWDEA KTL+MR KEEAHDYRYFPDPDL+ + I + W E++RA+IPELPD Sbjct: 241 GGKVVQETRRWDEANKKTLTMRSKEEAHDYRYFPDPDLVRMQISEEWIEAVRATIPELPD 300 Query: 301 ARKSRYSTEYGLTAYDAGVLTSSKPLADFFEGSLAYTKDAKAVANWMMXXXXXXXXXXXX 360 AR++RY E+GL+ DAGV+T SK ADFF+ ++ + K+VANW+M Sbjct: 301 ARQARYVNEFGLSKDDAGVITISKETADFFDETVKTGAEPKSVANWLMVDLLAHLNANNL 360 Query: 361 XXPQVKITPQGLGEMIGLIAGGTISSKIAKTVFKEMLESGKLPAAIVEEKGLVQISDEGA 420 VK+TP+GLGEMI LI GTISSKIAKTVFKEM+E+GK P IVEEKGLVQISDEGA Sbjct: 361 VFADVKMTPKGLGEMIKLIEDGTISSKIAKTVFKEMVETGKEPKQIVEEKGLVQISDEGA 420 Query: 421 IKQIVEAVVAANPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPGLVNTLLAEVLNS 477 ++Q+V V +NPQ+V D+K+G +KA F VGQVMK++KGKANPG+VN L+ EVLNS Sbjct: 421 LRQVVVDAVNSNPQAVADFKSGNEKAAAFFVGQVMKQTKGKANPGMVNKLIQEVLNS 477 >A8VVB7.1 A8VVB7_9BACI Peroxiredoxin EC=1.11.1.15 Length = 479 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/474 (65%), Positives = 378/474 (79%), Gaps = 1/474 (0%) Query: 1 MAKYETVIGLEVHVELHTKSKIFCGCSTEFGAPPNTHTCPVCLGHPGVLPVLNRQAVEYA 60 M+++ETVIGLEVHVEL T SKIFCGCST FGA PN +TCPVCLGHPGVLPVLNRQAV++A Sbjct: 1 MSEFETVIGLEVHVELKTNSKIFCGCSTSFGAEPNANTCPVCLGHPGVLPVLNRQAVDFA 60 Query: 61 MKAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGLNGWIDIEVDGQTKRIGIT 120 MKAAMA+NC I DV+KFDRKNYFYPDSPKAYQISQYD+PIG NG+IDIEV+G+TKRIGIT Sbjct: 61 MKAAMAINCEIADVTKFDRKNYFYPDSPKAYQISQYDKPIGENGYIDIEVNGETKRIGIT 120 Query: 121 RLHLEEDAGKLTHVDGGFA-SLVDFNRVGTPLIEIVSEPDLRSPEEARAYLEKIRAIMQY 179 RLHLEEDAGKLTHV+G +LVD+NRVGTPL+EIVSEPD+R+PEEA AYLEK++AI+QY Sbjct: 121 RLHLEEDAGKLTHVEGADPHTLVDYNRVGTPLVEIVSEPDIRTPEEAYAYLEKLKAIIQY 180 Query: 180 CDVSDVKMEEGSMRCDANISLRPEGQAEFGIRAELKNMNSFRGVLRGLEYEQFRQSEILD 239 +VSD KMEEGS+RCDANIS+RP GQ EFG + ELKN+NSF V +GLE+E+ RQ++++ Sbjct: 181 TEVSDCKMEEGSLRCDANISIRPYGQDEFGTKTELKNLNSFAHVQKGLEHEEKRQADVIS 240 Query: 240 DGGVVVQETRRWDEAQGKTLSMRGKEEAHDYRYFPDPDLIVLHIDDAWKESIRASIPELP 299 GG ++QETRR+DE T+ MR KE + DYRYFPDPDL+ H+D WK+ ++ SIPELP Sbjct: 241 GGGEILQETRRYDEQSKSTILMRVKEGSDDYRYFPDPDLVQYHLDAEWKKRVKNSIPELP 300 Query: 300 DARKSRYSTEYGLTAYDAGVLTSSKPLADFFEGSLAYTKDAKAVANWMMXXXXXXXXXXX 359 DAR+ RY + L AYDAGVLT K ++DFFE ++A K ++NW+M Sbjct: 301 DARQKRYVEDLDLPAYDAGVLTQQKAMSDFFEQAIAQGGPPKQLSNWLMGEVNAYLNQNG 360 Query: 360 XXXPQVKITPQGLGEMIGLIAGGTISSKIAKTVFKEMLESGKLPAAIVEEKGLVQISDEG 419 V +TP+ L MIG+I GTISSKIAK VFKE++E G P IV++KGLVQISDEG Sbjct: 361 KEIEDVPMTPEALVSMIGMIDKGTISSKIAKKVFKELIEKGGDPEKIVKDKGLVQISDEG 420 Query: 420 AIKQIVEAVVAANPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPGLVNTLLAE 473 I+++V + N QSV+D+K GK KAIGFLVGQVMK SKGKANP +VN LLAE Sbjct: 421 EIRKMVNDALDQNEQSVDDFKNGKDKAIGFLVGQVMKASKGKANPQMVNELLAE 474 >C5D4K7.1 C5D4K7_9BACI Glutamyl-tRNA(Gln) amidotransferase, B subunit Length = 477 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/476 (65%), Positives = 368/476 (77%), Gaps = 1/476 (0%) Query: 1 MAKYETVIGLEVHVELHTKSKIFCGCSTEFGAPPNTHTCPVCLGHPGVLPVLNRQAVEYA 60 M +ETVIGLEVHVEL TKSKIF FGAPPNT T + LG+PGVLPVLNRQAVE+A Sbjct: 1 MMNFETVIGLEVHVELKTKSKIFSSSPNAFGAPPNTQTNVIDLGYPGVLPVLNRQAVEFA 60 Query: 61 MKAAMALNCTIGDVSKFDRKNYFYPDSPKAYQISQYDQPIGLNGWIDIEVDGQTKRIGIT 120 MKAAMALNC I +KFDRKNYFYPD+PKAYQISQYDQP+G NGWI+IEV+G+ K+IGIT Sbjct: 61 MKAAMALNCEIATETKFDRKNYFYPDNPKAYQISQYDQPLGKNGWIEIEVNGKKKKIGIT 120 Query: 121 RLHLEEDAGKLTHVDGGFASLVDFNRVGTPLIEIVSEPDLRSPEEARAYLEKIRAIMQYC 180 R+HLEEDAGKLTH G+ SLVDFNR GTPLIEIVSEPD+RSPEEA AYLEK+++I+QY Sbjct: 121 RIHLEEDAGKLTHTGDGY-SLVDFNRQGTPLIEIVSEPDIRSPEEAYAYLEKLKSIIQYT 179 Query: 181 DVSDVKMEEGSMRCDANISLRPEGQAEFGIRAELKNMNSFRGVLRGLEYEQFRQSEILDD 240 VSD KMEEGS+RCDANISLRP G +FG + ELKN+NSF V GLEYE RQ +IL Sbjct: 180 GVSDCKMEEGSLRCDANISLRPIGSDKFGTKTELKNLNSFNFVRMGLEYEAKRQEKILLS 239 Query: 241 GGVVVQETRRWDEAQGKTLSMRGKEEAHDYRYFPDPDLIVLHIDDAWKESIRASIPELPD 300 GGV+ QETRR+DEA T+ MR KE + DYRYFP+PDL++L+IDD WKE +RASIPELPD Sbjct: 240 GGVIQQETRRFDEATKTTVLMRVKEGSEDYRYFPEPDLVMLYIDDEWKERVRASIPELPD 299 Query: 301 ARKSRYSTEYGLTAYDAGVLTSSKPLADFFEGSLAYTKDAKAVANWMMXXXXXXXXXXXX 360 ARK RY E GL YDA VLT +K +ADFFE ++A D K +NW+M Sbjct: 300 ARKKRYIEELGLPEYDAKVLTLTKEMADFFEATVANGADPKLASNWLMVEVSGYLNAEQK 359 Query: 361 XXPQVKITPQGLGEMIGLIAGGTISSKIAKTVFKEMLESGKLPAAIVEEKGLVQISDEGA 420 ++ +TP+ L MI LI GTISSKIAK VFKE++E G P IV+EKGLVQISDE Sbjct: 360 ELHEIALTPESLAGMIKLIQNGTISSKIAKKVFKELVEKGGDPEKIVKEKGLVQISDEAT 419 Query: 421 IKQIVEAVVAANPQSVEDYKAGKQKAIGFLVGQVMKESKGKANPGLVNTLLAEVLN 476 +++IV V+ ANPQSVEDYK GK +A+GFLVGQVMK +KG+ANP LVN LL E +N Sbjct: 420 LRKIVLEVLDANPQSVEDYKNGKDRALGFLVGQVMKATKGQANPPLVNKLLVEEIN 475 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,817,002,288 Number of extensions: 117321162 Number of successful extensions: 281583 Number of sequences better than 1.0e-05: 1591 Number of HSP's gapped: 277416 Number of HSP's successfully gapped: 1612 Length of query: 477 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 337 Effective length of database: 1,741,754,103 Effective search space: 586971132711 Effective search space used: 586971132711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)