BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0005.p (641 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDG1.1 B3KDG1_9BACI Putative uncharacterized protein 459 e-127 B1DHA9.1 B1DHA9_9BACL Putative uncharacterized protein 207 4e-51 C0UZQ3.1 C0UZQ3_9BACT Uncharacterized conserved protein (DUF2089) 72 3e-10 B3KDG2.1 B3KDG2_9BACI Putative uncharacterized protein 68 3e-09 C1PZY7.1 C1PZY7_9FIRM Uncharacterized conserved protein (DUF2089) 62 3e-07 >B3KDG1.1 B3KDG1_9BACI Putative uncharacterized protein Length = 439 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/419 (54%), Positives = 310/419 (73%), Gaps = 4/419 (0%) Query: 225 RVGRYTASALLIAVGVLLFLDWRNGTDHMLILLKWWPIIAVLWGLEYLLISFFSRHLSQG 284 RVGRYTA+ LL++ G LL LD GTD++ +L +WWP++ +L G+EY++ SR L G Sbjct: 6 RVGRYTAALLLVSTGALLLLDEWRGTDYIFMLQRWWPLLFILLGVEYIVRYTLSRAL--G 63 Query: 285 RARS-RSRMDLRGLLSAVVLAASVFIVSEQEHYLHLWNRVSLNLTAAAVDYGEAKGSKFQ 343 R R R R D+RG+L AV + ASVF++S+QEH+LHLWNRVSLNLTAA VDY EA+ ++FQ Sbjct: 64 RRREFRFRPDIRGILLAVAVTASVFVISQQEHFLHLWNRVSLNLTAAGVDYSEAEDNRFQ 123 Query: 344 KAPIVIPVELGTSKITVDGINGDILIHRAPVEDIEVATTVWVDQLEGAVAEAISEQSFVD 403 K + IPVEL T KI VD +NGDI I R V+DI V VWVD+ + VAEAI+EQS ++ Sbjct: 124 KPALDIPVELDTEKIIVDHLNGDISITRQDVDDIRVEAVVWVDREQPGVAEAIAEQSTIE 183 Query: 404 VTEGNTIKIIPKSKAYGDSGKRQPRMDLEISLPEDRRFNLEVRTMNGGITLQNVEAIEGI 463 V EG TI I K KAYG+SGKRQPRM+L I +P+DRRFN E+RTMNG ITL VEAIE I Sbjct: 184 VGEGKTITIRSKGKAYGESGKRQPRMNLNIEVPDDRRFNFEIRTMNGAITLNRVEAIENI 243 Query: 464 NLETGNGELILHRIFGNVKGKTLNGAVRARTVQGSVDLATSGGDMAAWDVTGALKLSTAV 523 LE+GNG + + R++GNV GKTLNG + AR V G++ ++T+ G+M A D+TG L+T V Sbjct: 244 LLESGNGPITMDRVYGNVTGKTLNGEITARGVIGNIKMSTNRGNMLAVDITGETDLTTQV 303 Query: 524 GNISAAGSGDQMELSSKNGNLEINGARSKLQAESLNGKIRVQSADFGGNWDIYSAVGDID 583 GN++ + D + + ++NGN+ I+GA S+L AESLNG + ++S GG+W++YSAVG+++ Sbjct: 304 GNMTVKRTTDHIRVQTRNGNILISGAESQLSAESLNGGVAIRSPRIGGDWNVYSAVGEMN 363 Query: 584 LYLPASGNYTVDGSSGYGDIVSDIPELTIDKKNISGEVGTGEFKLHVEGNSNLNV-RKY 641 L++P G+Y ++G+ YG I++ +P L I++K ISGE GTGE + +EGNSNLN+ R Y Sbjct: 364 LHVPLEGDYKLEGTISYGRILTTLPNLKIEQKTISGESGTGEHSIRIEGNSNLNIYRSY 422 >B1DHA9.1 B1DHA9_9BACL Putative uncharacterized protein Length = 618 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 234/469 (49%), Gaps = 58/469 (12%) Query: 220 ERRSRRVGRYTASALLIAVGVLLFLDWRNGTDHMLILLKWWPIIAVLWGLEYLLISFFSR 279 +R R+GR+TA+ +IAVG LL D G + + +L KWWP + +L G E ++ S R Sbjct: 154 DRSMFRLGRFTAAVFIIAVGGLLLWDQVKGRNDVALLGKWWPAVFILLGAEIIIYSIVYR 213 Query: 280 HLSQGRARSRSRMDLRGLLSAVVLAASVFIVSEQEHYLHLW--NRVSLNLTAAAVDYGEA 337 +A + R D G + A+V++ F V++ W V LN T DYGE Sbjct: 214 -----KAARKLRFDFIGAIIAIVISVVAFTVTQYAELPFRWLDQYVDLNGTP---DYGEE 265 Query: 338 KGSKFQKAPIVIPVELGT-SKITVDGINGDILIHRAPVEDIEVATTVWVDQLEGAVAEAI 396 KG KF K +P + SK+ + NG + + + + + T +WVD + AE I Sbjct: 266 KGFKFVKETDTVPFDAAAISKLKISNPNGKVTVRGGGTDQLVIDTEIWVDVTDEQAAEQI 325 Query: 397 SEQSFVD-VTEGNTIKIIPKSKAYGDSGKRQPRMDL------------------------ 431 +++S V+ V++ +++ I K + YG +G R+PR+++ Sbjct: 326 ADKSAVERVSDADSMTITAKGEPYGTNGSRKPRINIVVTVPQTTVTAQDPEDSAGIPSAD 385 Query: 432 ----------------EISLPEDRR-----FNLEVRTMNGGITLQNVEAIEGINLETGNG 470 E L E R + V NG +T + A G+ L++ NG Sbjct: 386 PSSDKNSNSESDLNATETPLNESERNSVPQMAITVDVNNGPVTASGLNAPGGVQLKSDNG 445 Query: 471 ELILHRIFGNVKGKTLNGAVRARTVQGSVDLATSGGDMAAWDVTGALKLSTAVGNISAAG 530 ++ +I G + LNG ++ +TV G +L+T G + A + G L T G ++ +G Sbjct: 446 DIDAEQIKGPLVVHGLNGGIKLQTVTGDAELSTKNGAITADALNGNLTAETWNGAMTLSG 505 Query: 531 SGDQMELSSKNGNLEINGARSKLQAESLNGKIRVQSADFGGNWDIYSAVGDIDLYLPASG 590 + +KNG + + +++A +LNG I + S GG+WD+ S VG+I L +PA+G Sbjct: 506 ITGSVGADTKNGKIAMKEVSGEVKASTLNGNIELASETVGGDWDLDSTVGEIKLRVPAAG 565 Query: 591 NYTVDGSSGYGDIVSDIPELTIDKKNISGEVGTGEFKLHVEGNSNLNVR 639 +Y+V GS +G I +D+P LT++KK + G +G+G +++ V +++ ++ Sbjct: 566 DYSVFGSVTFGSITTDLP-LTVNKKTVRGTIGSGTYRIQVNATNSIYIQ 613 >C0UZQ3.1 C0UZQ3_9BACT Uncharacterized conserved protein (DUF2089) Length = 417 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 16/209 (7%) Query: 442 NLEVRTMNGGITLQNVEAIEGINLETGNGELILHRIFGNVKGKTLNGAVRARTVQGSVDL 501 ++ V T NG + + VE I + TGNG +++ G+V + NG VR + +G + + Sbjct: 118 DVRVETGNGEVRVFQVEG--DITVSTGNGRILVTDFEGDVTLSSGNGEVRVSSGEGDLRV 175 Query: 502 ATSGGDMAAWDVTGALKLSTAVG--NISAAGSGDQMELSSKNGNLEINGAR-SKLQAESL 558 +T GD+ V G L ++TA G NIS S ++ SS G + + G ++Q S+ Sbjct: 176 STGNGDVNVQQVEGDLSINTAHGKVNISDCESA-RIRASSAMGPMRVVGCEIEEMQLNSM 234 Query: 559 NGKIRVQSADFGGNWDIYSAVGDIDLYLPASGNYTVDGSSGYGDIVSDIPELTIDKKNIS 618 G I + S GG + + S +GD+ + LP + +D +G+G + S+ P + + + S Sbjct: 235 MGDIYLDSELEGGRYQLSSGLGDVVVILPDDISVRIDAQTGFGRVHSEFPLVQVGR---S 291 Query: 619 GEVGTGEFKL-------HVEGNSNLNVRK 640 G +G G ++ H EG+ ++ K Sbjct: 292 GPMGFGGVRMVGTTGSDHPEGDLSIKTGK 320 >B3KDG2.1 B3KDG2_9BACI Putative uncharacterized protein Length = 205 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 57/131 (43%), Gaps = 2/131 (1%) Query: 60 IPGTGHIYFGLLRKGISXXXXXXXXXXXXXYFSSIGMQINXXXXXXXXXXXXXXYFYSVF 119 IPG GH+Y G+ RKGI+ YFSSIGMQIN YFY+V+ Sbjct: 43 IPGLGHLYLGMYRKGITFIMLLLLDISALLYFSSIGMQINVPLLVVLGLLIPVGYFYNVY 102 Query: 120 DVLQSADRLL--RLPGEQDPELPPVPKPHGQRRRLVSEPGISXXXXXXXXXXXXXXXQQK 177 DVLQ+A+ ++ + GE + +G E GI+ QK Sbjct: 103 DVLQAAEYIISRKRRGEAAAASGGDGRGNGANHLFRGERGIAFGLMLVVTGSLLILFHQK 162 Query: 178 PVWLQYFIEHY 188 P WLQ I Y Sbjct: 163 PPWLQQGIRDY 173 >C1PZY7.1 C1PZY7_9FIRM Uncharacterized conserved protein (DUF2089) Length = 350 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 16/218 (7%) Query: 358 ITVDGINGDILIHRAPVEDIEVATTVWVDQLEGAVAEAISEQSFVDVTEGNTIKIIPKSK 417 I +D +NGDI I R+ I ++ ++W A+ F+D+ + + I ++ Sbjct: 93 IEIDIVNGDIEIDRSDDNTIVISQSIW--------AKKADLNDFLDIEVKDDLLAISINE 144 Query: 418 AYGDSGKRQPRMDLEISLPEDRRFNLEVRTMNGGITLQNVEAIEGINLETGNGELILHRI 477 Y + Q D+ +SL + +L++ +NG + + +V+ ++L NG+++L I Sbjct: 145 NYKNI---QASSDIRLSLGSNLYDSLDINQVNGKVDISDVD-FTNLDLNNVNGKILLINI 200 Query: 478 FGNVKGKTLNGAVRARTVQGSVDLATSGGDMAAWDVTGAL-KLSTAVGNISAAG-SGDQM 535 G V +NG + + + G +D+ G + ++++G +ST GNI G + D++ Sbjct: 201 RGAVNVNNVNGKIDVKNIFGPIDIENVNGPIYLYNISGEYADVSTVNGNIRVDGLASDKL 260 Query: 536 ELSSKNGNLEINGARS--KLQAESLNGKIRVQSADFGG 571 + S GN+ + ++ + +S G + V + DF G Sbjct: 261 KAKSNAGNIRVFNIKNTKDIDLDSGFGNMVVDTTDFDG 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,356,513,371 Number of extensions: 131369830 Number of successful extensions: 352750 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 352607 Number of HSP's successfully gapped: 55 Length of query: 641 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 499 Effective length of database: 1,722,912,073 Effective search space: 859733124427 Effective search space used: 859733124427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)