BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0004.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDG0.1 B3KDG0_9BACI Ferric-uptake regulator                         249   8e-65
B1DHB0.1 B1DHB0_9BACL Ferric uptake regulator, Fur family             212   7e-54
Q9JWQ8.1 Q9JWQ8_BACHD YgaG                                            202   8e-51
A7Z2P0.1 A7Z2P0_BACA2 PerR                                            197   4e-49
A6CLU2.1 A6CLU2_9BACI Transcriptional regulator (Fur family) pro...   196   5e-49

>B3KDG0.1 B3KDG0_9BACI Ferric-uptake regulator
          Length = 139

 Score =  249 bits (635), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 128/138 (92%)

Query: 4   MGSGVQHALEQLKTTGVRITPQRHAILSYLMEAMNHPTADDIYRALEPQFPSMSVATVYN 63
           MG+ VQHALEQLKTTGVRITPQRHAIL+YL+E+M HPTAD+IYRALEP FPSMSVATVYN
Sbjct: 1   MGTSVQHALEQLKTTGVRITPQRHAILTYLVESMGHPTADEIYRALEPNFPSMSVATVYN 60

Query: 64  NLKMFMEAGMVRELTYGDNSSRFDANVSDHYHVICQECGRIEDFSYSSLHEVEQRAEQAT 123
           NLKMF+EAGMVRELTYGDNSSRFDANVSDH+HVICQ CG+IEDFSY SL +V  +AE++T
Sbjct: 61  NLKMFIEAGMVRELTYGDNSSRFDANVSDHHHVICQSCGKIEDFSYPSLEDVGVQAEKST 120

Query: 124 GFKIHGLRMELYGICKCC 141
           GF++ GLRMELYG+CK C
Sbjct: 121 GFEVKGLRMELYGLCKSC 138


>B1DHB0.1 B1DHB0_9BACL Ferric uptake regulator, Fur family
          Length = 144

 Score =  212 bits (540), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 93/143 (65%), Positives = 117/143 (81%)

Query: 4   MGSGVQHALEQLKTTGVRITPQRHAILSYLMEAMNHPTADDIYRALEPQFPSMSVATVYN 63
           MG+ V  A+EQLK  GVR+TPQRHAILSYLM +M+HPTAD+IY++L P FPSMSVAT+YN
Sbjct: 1   MGASVTEAIEQLKMNGVRMTPQRHAILSYLMGSMSHPTADEIYKSLSPNFPSMSVATIYN 60

Query: 64  NLKMFMEAGMVRELTYGDNSSRFDANVSDHYHVICQECGRIEDFSYSSLHEVEQRAEQAT 123
           NL++F+EAG+VRELTYGD+SSRFDA++SDHYH IC+ CG+I DF Y  L EVE+ A   T
Sbjct: 61  NLRLFVEAGLVRELTYGDDSSRFDADLSDHYHAICKSCGQIVDFEYPPLLEVERVASNKT 120

Query: 124 GFKIHGLRMELYGICKCCTEKTQ 146
           GF + G RME+YG+C  C+E  +
Sbjct: 121 GFMVEGHRMEIYGVCSSCSETAR 143


>Q9JWQ8.1 Q9JWQ8_BACHD YgaG
          Length = 145

 Score =  202 bits (514), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 113/139 (81%)

Query: 8   VQHALEQLKTTGVRITPQRHAILSYLMEAMNHPTADDIYRALEPQFPSMSVATVYNNLKM 67
           +Q A+E LKTT VR+TPQRHAIL YL E+M HPTAD+IY+ALE +FP+MSVATVYNNL++
Sbjct: 6   LQGAIEALKTTRVRMTPQRHAILEYLFESMTHPTADEIYKALEGRFPNMSVATVYNNLRV 65

Query: 68  FMEAGMVRELTYGDNSSRFDANVSDHYHVICQECGRIEDFSYSSLHEVEQRAEQATGFKI 127
           F EAG+V+ELTYGD+SSRFD   SDHYHVIC+ECG+I DF Y  L EVE  AE  TGFK+
Sbjct: 66  FKEAGIVKELTYGDSSSRFDCVTSDHYHVICEECGKIVDFHYPGLDEVETLAEHVTGFKV 125

Query: 128 HGLRMELYGICKCCTEKTQ 146
              RME+YGIC  C +K+Q
Sbjct: 126 SSHRMEIYGICPDCQKKSQ 144


>A7Z2P0.1 A7Z2P0_BACA2 PerR
          Length = 145

 Score =  197 bits (500), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 111/137 (81%)

Query: 8   VQHALEQLKTTGVRITPQRHAILSYLMEAMNHPTADDIYRALEPQFPSMSVATVYNNLKM 67
           ++ AL+ LK TGVRITPQRHAIL YL+++M HPTADDIY+ALE +FP+MSVATVYNNL++
Sbjct: 6   LKEALDTLKDTGVRITPQRHAILEYLVDSMAHPTADDIYKALEGKFPNMSVATVYNNLRV 65

Query: 68  FMEAGMVRELTYGDNSSRFDANVSDHYHVICQECGRIEDFSYSSLHEVEQRAEQATGFKI 127
           F EAG+V+ELTYGD SSRFD   SDHYH IC+ CG+I DF Y  L EVEQ A   TGFK+
Sbjct: 66  FREAGLVKELTYGDASSRFDFVTSDHYHAICESCGKIVDFHYPGLDEVEQLAAHVTGFKV 125

Query: 128 HGLRMELYGICKCCTEK 144
              R+E+YG+C+ C++K
Sbjct: 126 SHHRLEIYGVCQECSKK 142


>A6CLU2.1 A6CLU2_9BACI Transcriptional regulator (Fur family) protein
          Length = 145

 Score =  196 bits (498), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 107/135 (79%)

Query: 8   VQHALEQLKTTGVRITPQRHAILSYLMEAMNHPTADDIYRALEPQFPSMSVATVYNNLKM 67
           ++ A++ LK TGVRITPQRHAIL YL+ +M HPTADDIY+ALE +FP+MSVATVYNNL++
Sbjct: 6   LKEAIDTLKETGVRITPQRHAILEYLIHSMAHPTADDIYKALEGKFPNMSVATVYNNLRV 65

Query: 68  FMEAGMVRELTYGDNSSRFDANVSDHYHVICQECGRIEDFSYSSLHEVEQRAEQATGFKI 127
           F E G+V+ELTYGD SSRFD   SDHYHVIC ECG+I DF Y  L EVEQ A   TGFK+
Sbjct: 66  FREVGLVKELTYGDASSRFDYVTSDHYHVICDECGKIVDFHYPGLDEVEQLASHVTGFKV 125

Query: 128 HGLRMELYGICKCCT 142
              RME+YG C+ C+
Sbjct: 126 RNHRMEIYGTCESCS 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 820,383,824
Number of extensions: 29277566
Number of successful extensions: 70521
Number of sequences better than 1.0e-05: 2535
Number of HSP's gapped: 68775
Number of HSP's successfully gapped: 2535
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)