BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0099.0008.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E397.1 B9E397_CLOK1 Putative uncharacterized protein 400 e-110 A6LVV8.1 A6LVV8_CLOB8 Transcriptional regulator, LysR family 400 e-109 A5MZA2.1 A5MZA2_CLOK5 Transcriptional regulator 399 e-109 B3KJU5.1 B3KJU5_9BACI Regulatory protein LysR 364 7e-99 B1DKN9.1 B1DKN9_9BACL Transcriptional regulator, MarR family 351 5e-95 >B9E397.1 B9E397_CLOK1 Putative uncharacterized protein Length = 314 Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/299 (63%), Positives = 242/299 (80%), Gaps = 1/299 (0%) Query: 1 LQQLRYAIEIANSGSMNEAAKRLFVSQPSLSNAIKELENELGITIFERNNRGISISAEGV 60 LQQL+YAIEIAN GS NEAAKRLF+SQPSLS AIKELE ELGI IFER NRGISIS +G Sbjct: 7 LQQLKYAIEIANCGSFNEAAKRLFISQPSLSKAIKELEVELGIGIFERTNRGISISIDGA 66 Query: 61 EFLGYARQIIEQTEFMENRYTGKKRSPIYFSVSTQHYPFVVDAFVKLMKENKVTEYNFSL 120 EFLGYARQIIEQTE +ENRY G++ ++FS+STQHY FVVDAF+KLMK N ++Y F+L Sbjct: 67 EFLGYARQIIEQTEVLENRYHGERFKALHFSLSTQHYAFVVDAFIKLMKSNDNSKYEFTL 126 Query: 121 RETQTYEIIEDVRTLRSDLGILYINEGNYKVMNKLFSDGNLKFTPLFNTNPHVYVRAGHM 180 +ET+TYEIIEDV+TL+SD+GILY N+ N KVMNKLFSD N+KFTPLFN PHV+V H Sbjct: 127 KETKTYEIIEDVKTLKSDIGILYTNDLNSKVMNKLFSDSNIKFTPLFNVTPHVFVGKNHP 186 Query: 181 LAGKELITLEDILPYPYITFEQGENNSLHFSEEMLSFTQIEKNIQVTDRATLTHLLLGSD 240 L K+++T+ED+ +P+I F+QGE NSL+FSEE+L+F+ K+I V DRATL++LL GSD Sbjct: 187 LLNKKVVTMEDLASFPFIVFDQGEKNSLNFSEEILNFSNTNKSIVVNDRATLSNLLTGSD 246 Query: 241 SYTVGTGIMDAELNGDGLVTIPFDSPEMFTVGWIAHKDRKPGEMMSAYIDILN-DLVTR 298 YTVGTG++ NGD + +IP +S ++ T+GWI+HK+ K ++ + YI+ILN D+ T+ Sbjct: 247 GYTVGTGVLVPAFNGDEIQSIPIESDQIVTIGWISHKNIKLSKIAAKYIEILNYDIATK 305 >A6LVV8.1 A6LVV8_CLOB8 Transcriptional regulator, LysR family Length = 308 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/308 (61%), Positives = 246/308 (79%) Query: 1 LQQLRYAIEIANSGSMNEAAKRLFVSQPSLSNAIKELENELGITIFERNNRGISISAEGV 60 +QQL+YA+EIA GS+NEAAK+LF+SQPSLSN+I+ELE+ELGI IFER NRGISIS++G+ Sbjct: 1 MQQLKYALEIARYGSINEAAKKLFISQPSLSNSIRELESELGIVIFERTNRGISISSDGI 60 Query: 61 EFLGYARQIIEQTEFMENRYTGKKRSPIYFSVSTQHYPFVVDAFVKLMKENKVTEYNFSL 120 EFLGYARQI EQ EF+E+RY G++ ++FSVSTQHY FVV+AF KL+KE + +Y F+L Sbjct: 61 EFLGYARQISEQAEFIEDRYHGRREKIMHFSVSTQHYAFVVNAFTKLLKEIETNQYEFNL 120 Query: 121 RETQTYEIIEDVRTLRSDLGILYINEGNYKVMNKLFSDGNLKFTPLFNTNPHVYVRAGHM 180 RET+TYEIIEDV+TLRSD+GILYINE N KVMN++FSD NLKFTPLFN NPH+ + H Sbjct: 121 RETKTYEIIEDVKTLRSDVGILYINEVNSKVMNRIFSDSNLKFTPLFNANPHIIISNNHP 180 Query: 181 LAGKELITLEDILPYPYITFEQGENNSLHFSEEMLSFTQIEKNIQVTDRATLTHLLLGSD 240 L+ KE +T ++L + YITFEQG NNS +FSEEM++ + K+I+V DRATL+ LL +D Sbjct: 181 LSTKESVTTNEMLEFTYITFEQGINNSFNFSEEMMNMANVPKSIKVIDRATLSTLLTSTD 240 Query: 241 SYTVGTGIMDAELNGDGLVTIPFDSPEMFTVGWIAHKDRKPGEMMSAYIDILNDLVTRNN 300 SYT+GTG +D++ + L IP + E+FTVGWIAHKD K ++ YI+ILN++++ N Sbjct: 241 SYTIGTGFIDSDFDESKLKAIPIECDEIFTVGWIAHKDIKLNKITMRYIEILNEIISTNY 300 Query: 301 FDLKSFLL 308 DL +LL Sbjct: 301 LDLNYYLL 308 >A5MZA2.1 A5MZA2_CLOK5 Transcriptional regulator Length = 310 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/299 (63%), Positives = 242/299 (80%), Gaps = 1/299 (0%) Query: 1 LQQLRYAIEIANSGSMNEAAKRLFVSQPSLSNAIKELENELGITIFERNNRGISISAEGV 60 LQQL+YAIEIAN GS NEAAKRLF+SQPSLS AIKELE ELGI IFER NRGISIS +G Sbjct: 3 LQQLKYAIEIANCGSFNEAAKRLFISQPSLSKAIKELEVELGIGIFERTNRGISISIDGA 62 Query: 61 EFLGYARQIIEQTEFMENRYTGKKRSPIYFSVSTQHYPFVVDAFVKLMKENKVTEYNFSL 120 EFLGYARQIIEQTE +ENRY G++ ++FS+STQHY FVVDAF+KLMK N ++Y F+L Sbjct: 63 EFLGYARQIIEQTEVLENRYHGERFKALHFSLSTQHYAFVVDAFIKLMKSNDNSKYEFTL 122 Query: 121 RETQTYEIIEDVRTLRSDLGILYINEGNYKVMNKLFSDGNLKFTPLFNTNPHVYVRAGHM 180 +ET+TYEIIEDV+TL+SD+GILY N+ N KVMNKLFSD N+KFTPLFN PHV+V H Sbjct: 123 KETKTYEIIEDVKTLKSDIGILYTNDLNSKVMNKLFSDSNIKFTPLFNVTPHVFVGKNHP 182 Query: 181 LAGKELITLEDILPYPYITFEQGENNSLHFSEEMLSFTQIEKNIQVTDRATLTHLLLGSD 240 L K+++T+ED+ +P+I F+QGE NSL+FSEE+L+F+ K+I V DRATL++LL GSD Sbjct: 183 LLNKKVVTMEDLASFPFIVFDQGEKNSLNFSEEILNFSNTNKSIVVNDRATLSNLLTGSD 242 Query: 241 SYTVGTGIMDAELNGDGLVTIPFDSPEMFTVGWIAHKDRKPGEMMSAYIDILN-DLVTR 298 YTVGTG++ NGD + +IP +S ++ T+GWI+HK+ K ++ + YI+ILN D+ T+ Sbjct: 243 GYTVGTGVLVPAFNGDEIQSIPIESDQIVTIGWISHKNIKLSKIAAKYIEILNYDIATK 301 >B3KJU5.1 B3KJU5_9BACI Regulatory protein LysR Length = 300 Score = 364 bits (934), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 168/297 (56%), Positives = 229/297 (77%) Query: 1 LQQLRYAIEIANSGSMNEAAKRLFVSQPSLSNAIKELENELGITIFERNNRGISISAEGV 60 LQQL+YAIE+AN GSMNEAAKRLF+SQPSLSNAIK+LE EL ITIFER N+GIS+S EG Sbjct: 3 LQQLKYAIEVANRGSMNEAAKRLFISQPSLSNAIKDLEEELRITIFERTNKGISLSKEGA 62 Query: 61 EFLGYARQIIEQTEFMENRYTGKKRSPIYFSVSTQHYPFVVDAFVKLMKENKVTEYNFSL 120 EFLGYARQ++EQ E +E RY K SP +FSVSTQHY F V+AFVKL++E EY +L Sbjct: 63 EFLGYARQVVEQAELLEGRYLNAKPSPQHFSVSTQHYAFAVNAFVKLVQEYGQDEYELAL 122 Query: 121 RETQTYEIIEDVRTLRSDLGILYINEGNYKVMNKLFSDGNLKFTPLFNTNPHVYVRAGHM 180 RET+TYEII+DV+TLRS++GILY+NE N KV+NKL D L+FT LF +PH+++ + Sbjct: 123 RETKTYEIIQDVKTLRSEIGILYLNEFNAKVINKLLKDAGLQFTSLFTASPHIFISIKNP 182 Query: 181 LAGKELITLEDILPYPYITFEQGENNSLHFSEEMLSFTQIEKNIQVTDRATLTHLLLGSD 240 LA + ++T++++ YPY++FEQGE NS HFSEE+LS +K+I+V DRATL +LL+G + Sbjct: 183 LAKQSIVTIDELQNYPYLSFEQGEYNSFHFSEEILSTLSHKKSIRVNDRATLFNLLIGLN 242 Query: 241 SYTVGTGIMDAELNGDGLVTIPFDSPEMFTVGWIAHKDRKPGEMMSAYIDILNDLVT 297 YT+ TG++ A+LNG+ ++ +P E VGWI+HK+ ++ +AY++ L++ + Sbjct: 243 GYTISTGVLSADLNGNEIIPVPLACDETINVGWISHKNATLSKLAAAYVEALHEAIA 299 >B1DKN9.1 B1DKN9_9BACL Transcriptional regulator, MarR family Length = 302 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 163/297 (54%), Positives = 226/297 (76%) Query: 1 LQQLRYAIEIANSGSMNEAAKRLFVSQPSLSNAIKELENELGITIFERNNRGISISAEGV 60 L QL+Y IE+AN GS+NEAAKRLF+SQP+LSNAIK+LE EL + IFER+N+GIS+S EGV Sbjct: 3 LTQLKYIIEVANRGSINEAAKRLFISQPTLSNAIKDLEEELQLAIFERSNKGISLSKEGV 62 Query: 61 EFLGYARQIIEQTEFMENRYTGKKRSPIYFSVSTQHYPFVVDAFVKLMKENKVTEYNFSL 120 EFL YARQ++EQ E +E RY +K SP +FSVSTQHY F V+AFV L++E+ EY SL Sbjct: 63 EFLSYARQVVEQAELLEGRYLNRKPSPQHFSVSTQHYAFAVNAFVSLVQEHGQEEYELSL 122 Query: 121 RETQTYEIIEDVRTLRSDLGILYINEGNYKVMNKLFSDGNLKFTPLFNTNPHVYVRAGHM 180 RET+TYEIIEDV++LRS++GILY+NE N KV+NKL D NL+FT LF PH+++ + Sbjct: 123 RETKTYEIIEDVKSLRSEIGILYLNEFNGKVINKLLKDSNLQFTSLFTAKPHIFISIKNP 182 Query: 181 LAGKELITLEDILPYPYITFEQGENNSLHFSEEMLSFTQIEKNIQVTDRATLTHLLLGSD 240 LA + +T++ + +PY++F+QGE NS HF+EE+LS +K+I+V DRATL +LL+G + Sbjct: 183 LAKQAKVTIDQLDEFPYLSFDQGEYNSFHFAEEILSTLSHKKSIRVNDRATLFNLLIGLN 242 Query: 241 SYTVGTGIMDAELNGDGLVTIPFDSPEMFTVGWIAHKDRKPGEMMSAYIDILNDLVT 297 YT+ TG++ AELNG+ ++ +P D+ E VGWIAH+ ++ +AYI+ L+ + Sbjct: 243 GYTISTGVLSAELNGNEIIPVPLDTDETINVGWIAHRSTALSKLGTAYIEALHQAIA 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,791,740,029 Number of extensions: 76750245 Number of successful extensions: 222045 Number of sequences better than 1.0e-05: 6092 Number of HSP's gapped: 220241 Number of HSP's successfully gapped: 6093 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)