BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0009.p (327 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBE6.1 B3KBE6_9BACI ATPase BadF/BadG/BcrA/BcrD type 228 6e-58 B3K850.1 B3K850_9BACI ATPase BadF/BadG/BcrA/BcrD type 222 4e-56 B1D8W7.1 B1D8W7_9BACL ATPase BadF/BadG/BcrA/BcrD type 212 4e-53 A7NQ17.1 A7NQ17_ROSCS ATPase BadF/BadG/BcrA/BcrD type 118 7e-25 A5V091.1 A5V091_ROSS1 ATPase, BadF/BadG/BcrA/BcrD type 105 5e-21 >B3KBE6.1 B3KBE6_9BACI ATPase BadF/BadG/BcrA/BcrD type Length = 330 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 172/312 (55%), Gaps = 1/312 (0%) Query: 1 MGIDGGGSKTYALLCDEHGNVLGKGRSGNGNHQTGXXXXXXXXXXXXXXXXXXXXXQLSD 60 +G+DGGGSKT A++ D G + GKG G GNHQ G D Sbjct: 5 LGVDGGGSKTLAVVADGTGRIAGKGMGGCGNHQLGAARAEASIRQAVEEALGQAGLGRED 64 Query: 61 IRHAYLGLAGADRKTDYDILHPMIRSIGFMHYTISGDPMIGLRAGTSRPYGVALICGTGT 120 I A GLAGADR+ D+ IL PMI ++GF + I+ D +I +RAGT + GV LICG+GT Sbjct: 65 IACASFGLAGADREADFRILRPMIGAMGFKKHHIACDTVIAMRAGTRQRDGVVLICGSGT 124 Query: 121 NAAGRSRESRHYQCXXXXXXXXXXXXXXALNIEVFRTVLRAWDGREAXXXXXXXXXXXXG 180 N G + Q L +EVFRTV+R+W+GRE Sbjct: 125 NGYGVNSAGEEIQIGGFGYAFGDFGGGADLAVEVFRTVVRSWEGREKPTSLTPLTLDALR 184 Query: 181 YAQVEDMFNDFLDHGKSVPLDAARLLFPXXXXXXXXXXXILHRQGVELGKAAAAVIHRLG 240 + VE+MF+ FLD G+ P ARLLF IL RQG+ELGK A+AVI +LG Sbjct: 185 FGSVEEMFHRFLDEGRRAPHTLARLLF-QAAPADEAAREILERQGMELGKVASAVIRKLG 243 Query: 241 METDVFDVVLAGSLLTRGDRGWIRGPIEQAVHHAAPNASVVTLTTEPVVGAVWSALEEDG 300 M D FDVVLAGS+LTRG+R ++ IE V AAPN+ V L EP GAV A++E+G Sbjct: 244 MGNDAFDVVLAGSVLTRGERDYVVPYIESQVLAAAPNSRVRILALEPAAGAVLLAMDENG 303 Query: 301 LIVTNEIHEKMR 312 ++ ++E+++ Sbjct: 304 VVPGTAVYEQLQ 315 >B3K850.1 B3K850_9BACI ATPase BadF/BadG/BcrA/BcrD type Length = 327 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 166/323 (51%), Gaps = 2/323 (0%) Query: 1 MGIDGGGSKTYALLCDEHGNVLGKGRSGNGNHQTGXXXXXXXXXXXXXXXXXXXXXQLSD 60 +G+D GGSKT+A++CDE GN+LGKG SGNGNHQ D Sbjct: 5 LGVDAGGSKTHAVICDEQGNILGKGASGNGNHQIHREHAARNIEEACNRALQEAGAAKED 64 Query: 61 IRHAYLGLAGADRKTDYDILHPMIRSIGFMHYTISGDPMIGLRAGTSRPYGVALICGTGT 120 I +AY GLAGADR+ DY+IL PMI ++G+ + I+ D +IG+RAGTSRPYG ALICGTG Sbjct: 65 ISYAYFGLAGADREADYEILRPMIGALGYPRHAIACDTIIGMRAGTSRPYGAALICGTGF 124 Query: 121 NAAGRSRESRHYQCXXXXXXXXXXXXXXA-LNIEVFRTVLRAWDGREAXXXXXXXXXXXX 179 N+A R+R Q + FR V+RAWD R Sbjct: 125 NSAARNRAGEELQYGGFGFLYGDGYAGGSGFATLAFRAVIRAWDERGPATLLTSLVLEQM 184 Query: 180 GYAQVEDMFNDFLDHGKSVPLDAARLLFPXXXXXXXXXXXILHRQGVELGKAAAAVIHRL 239 GY VE M+ D L VP + LF IL +G EL A +I RL Sbjct: 185 GYTSVEPMYEDVLYGRTKVPPSLVKTLFQAAEAGDEVATWILENEGEELANAVCTLIRRL 244 Query: 240 GMETDVFDVVLAGSLLTRGDRGWIRGPIEQAVHHAAPNASVVTLTTEPVVGAVWSALEED 299 M + FD+V GS+L R + + IE+ V AP+AS V LT++PV GA+ A++ D Sbjct: 245 DMADEAFDIVYIGSVLNRPNSSILTDAIERIVAVRAPHASCVRLTSDPVSGALLCAMDAD 304 Query: 300 GLIVTNEIHEKMRVFQDFEAIPT 322 G V E K++ F FE T Sbjct: 305 GHAVDVETEAKLKAFT-FEQATT 326 >B1D8W7.1 B1D8W7_9BACL ATPase BadF/BadG/BcrA/BcrD type Length = 321 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/313 (38%), Positives = 164/313 (52%), Gaps = 1/313 (0%) Query: 1 MGIDGGGSKTYALLCDEHGNVLGKGRSGNGNHQTGXXXXXXXXXXXXXXXXXXXXXQLSD 60 +GID GGSKT+ALL DE+G VLG+G GNGNHQT + Sbjct: 5 LGIDAGGSKTHALLTDENGRVLGRGSGGNGNHQTAFEAARTEIDRACAEALRQAGVAKEE 64 Query: 61 IRHAYLGLAGADRKTDYDILHPMIRSIGFMHYTISGDPMIGLRAGTSRPYGVALICGTGT 120 + AY GLAGADR+ DY IL PMI S+ F + I+ D MIG+RAGT + YG +I GTG Sbjct: 65 VDFAYFGLAGADREPDYAILRPMIASLNFPRHDIACDTMIGMRAGTHQSYGAVIISGTGF 124 Query: 121 NAAGRSRESRHYQCXXXXXXXXXXXXXXA-LNIEVFRTVLRAWDGREAXXXXXXXXXXXX 179 NAA R+ E Q L I FR+ +R+W+GRE Sbjct: 125 NAAARNAEGEELQYGGFGYLFGDGQGSGTDLAIHAFRSAVRSWEGRELPSILTELVPRQM 184 Query: 180 GYAQVEDMFNDFLDHGKSVPLDAARLLFPXXXXXXXXXXXILHRQGVELGKAAAAVIHRL 239 GY+ V +M+ D LD+G ++ +F IL G E G A A+I RL Sbjct: 185 GYSSVPEMYEDALDNGVRPAKSLSQTMFEAASLGDKVAIRILEEAGHEHGNAVNALIRRL 244 Query: 240 GMETDVFDVVLAGSLLTRGDRGWIRGPIEQAVHHAAPNASVVTLTTEPVVGAVWSALEED 299 GME D FDVVL GS+L +G + I+ +V AP+A++V LT +PV+GA+ SA++ Sbjct: 245 GMEQDSFDVVLTGSVLAKGSSPHMGDAIKASVASTAPHANIVKLTIDPVIGALMSAMDSS 304 Query: 300 GLIVTNEIHEKMR 312 G ++ E +R Sbjct: 305 GTAISAETDAALR 317 >A7NQ17.1 A7NQ17_ROSCS ATPase BadF/BadG/BcrA/BcrD type Length = 334 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 137/305 (44%), Gaps = 6/305 (1%) Query: 1 MGIDGGGSKTYALLCDEHGNVLGKGRSGNGNHQ-TGXXXXXXXXXXXXXXXXXXXXXQLS 59 +GID GGSKT+AL+ D G V+G G SG GN + G + Sbjct: 7 VGIDAGGSKTHALIADLEGRVVGGGESGPGNWEGVGLDGAFDAYARAIDAALRMAGINRT 66 Query: 60 DIRHAYLGLAGADRKTDYDILHPMIRSIGFM-HYTISGDPMIGLRAGTSRPYGVALICGT 118 DI A LAG D ++D L +IR + YT+ D LRAG++ GVA+I GT Sbjct: 67 DICAAGYALAGLDWESDVARLESVIRRLDLPGPYTLVNDAFGALRAGSTDGCGVAVIAGT 126 Query: 119 GTNAAGRSRESRHYQCXXXXXXXXXXXXXXALNIEVFRTVLRAWDGREAXXXXXXXXXXX 178 G+ AGR+R ++ L E R + AW GR Sbjct: 127 GSTVAGRNRRGATFRTFGLGMHWGDFHGAAGLVWEATRAIGHAWIGRGPATALSDAFVRA 186 Query: 179 XGYAQVEDMFNDFLDHGKSVPLDA--ARLLFPXXXXXXXXXXXILHRQGVELGKAAAAVI 236 G V D+ + + G + P + ARL+F I+ + G ELG AAAV+ Sbjct: 187 YGAVDVPDLV-ERVSRGAAPPPNGRLARLVFTVADAGDEVACRIVRQAGEELGLTAAAVV 245 Query: 237 HRLGMETDVFDVVLAGSLLTRGDRGWIRGPIEQAVHHAAPNASVVTLTTEPVVGAVWSAL 296 +L +E + FD+VLAG + +R I G + + V AP A VV L PV G++ A Sbjct: 246 RKLALEHESFDLVLAGGVFRARNRLLI-GALTEQVRRCAPMARVVRLEAPPVAGSLLLAF 304 Query: 297 EEDGL 301 + G+ Sbjct: 305 DAAGV 309 >A5V091.1 A5V091_ROSS1 ATPase, BadF/BadG/BcrA/BcrD type Length = 336 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 137/315 (43%), Gaps = 6/315 (1%) Query: 1 MGIDGGGSKTYALLCDEHGNVLGKGRSGNGNHQ-TGXXXXXXXXXXXXXXXXXXXXXQLS 59 +GID GGSKT+AL+ D G V+G G+SG GN + G Sbjct: 7 LGIDAGGSKTHALIADLEGRVVGWGQSGPGNWEGVGLDGAAAAYAQAVDAALEVAGISRD 66 Query: 60 DIRHAYLGLAGADRKTDYDILHPMIRSIGFM-HYTISGDPMIGLRAGTSRPYGVALICGT 118 + A LAG D ++D+D L P++ +G + + D LRAG++ GV +I GT Sbjct: 67 ALIAAGYALAGLDWESDHDRLTPVVTRLGVPGPFILVNDAFGALRAGSADGCGVVVIVGT 126 Query: 119 GTNAAGRSRESRHYQCXXXXXXXXXXXXXXALNIEVFRTVLRAWDGREAXXXXXXXXXXX 178 G+ AGR+R ++ L E R + AW GR Sbjct: 127 GSTVAGRNRRGDTFRTFGLGMVWGDFHGATGLVWEATRAIGHAWIGRGPATALTDAFVQA 186 Query: 179 XGYAQVEDMFNDFLDHGKSVPLDA--ARLLFPXXXXXXXXXXXILHRQGVELGKAAAAVI 236 G A + D+ + + G + D A L+F I+ + G +LG+ AAAV+ Sbjct: 187 YGAAGLLDLV-ERVSRGAAPHPDGRLAPLIFATADAGDEVACRIVRQAGEDLGQTAAAVV 245 Query: 237 HRLGMETDVFDVVLAGSLLTRGDRGWIRGPIEQAVHHAAPNASVVTLTTEPVVGAVWSAL 296 +LG+ + FD+VLAG + R + + V +P VV L PV G+V A Sbjct: 246 RKLGLGAEPFDLVLAGGVF-RSRNTLLIETLASQVRLESPAVRVVLLEAPPVAGSVLLAF 304 Query: 297 EEDGLIVTNEIHEKM 311 + GL + E++ Sbjct: 305 DAAGLPTPPALRERL 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,669,063,731 Number of extensions: 59195116 Number of successful extensions: 123822 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 123816 Number of HSP's successfully gapped: 44 Length of query: 327 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 191 Effective length of database: 1,779,438,163 Effective search space: 339872689133 Effective search space used: 339872689133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)