BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0005.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LZC1.1 A6LZC1_CLOB8 AraC-type transcriptional regulator domain... 343 1e-92 Q1IW54.1 Q1IW54_DEIGD Transcriptional regulator, AraC family 261 6e-68 A2W4C1.1 A2W4C1_9BURK Helix-turn-helix protein 243 1e-62 C0N265.1 C0N265_9GAMM AraC-type transcriptional regulator N-term... 243 2e-62 Q39PG1.1 Q39PG1_BURS3 Transcriptional regulator, AraC family 243 2e-62 >A6LZC1.1 A6LZC1_CLOB8 AraC-type transcriptional regulator domain protein Length = 318 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 159/298 (53%), Positives = 215/298 (72%) Query: 2 NATTLHDAELSRLVGLINNYVQSDGTFSQPIPGLHIRRYSRTGVDWEKAFYLPSVLIVAQ 61 N L +++RL L+ DG + PI GL I RYS T +D K FYLPS+ IVAQ Sbjct: 14 NIERLLQTKMTRLAHLLYTCAPQDGVLTLPISGLSIIRYSGTEIDCPKTFYLPSLSIVAQ 73 Query: 62 GVKTVRLEKETFQIGKSRMFMIPVALPVSLRTIQANAEQPFIGIGLTLDPEKIAEFVPKV 121 G +++ + ET+++ KS+M M P+ LP+SL+T++A +P + I + LDPE+IAE VPKV Sbjct: 74 GARSISIGHETYKLDKSQMLMNPITLPISLQTMKATKSEPLLIIRVDLDPERIAEIVPKV 133 Query: 122 YPRGLPSVQTRCAGYTAEADTGIIHAVTRLIECLHHPSDAELLAPIVKDEILMRLLLSPI 181 Y GLP ++ CAG+ AD II A+ RL+ECL P D E +AP++ +EIL+RLL P Sbjct: 134 YSHGLPEIKQWCAGHVMNADISIIDAMIRLLECLQKPGDVEFIAPLIMEEILIRLLRGPA 193 Query: 182 GIHIAEMGFADTSVRQVAKAIEWLRSNFDQPMKVSELASLSHMSVSVFHKHFKAVTSISP 241 GI++A MGFAD+ V QV++AI WLR NF Q +KVS+LA L+HMSVS F+ HFKAVTS+SP Sbjct: 194 GIYVAAMGFADSEVNQVSEAIAWLRKNFSQAVKVSDLAKLTHMSVSSFYNHFKAVTSMSP 253 Query: 242 LKYQKELRLQEARNLMLSKQMDAITASQLVGYASASQFSRDYRSYFGNPPRRDMAKLH 299 ++YQK LRL EARNLMLS+ MDA TA ++VGY S SQFSRDY +++G PPR+D+ +L+ Sbjct: 254 MQYQKALRLHEARNLMLSQHMDATTACRMVGYVSNSQFSRDYSAFYGAPPRKDIGRLY 311 >Q1IW54.1 Q1IW54_DEIGD Transcriptional regulator, AraC family Length = 272 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 130/272 (47%), Positives = 185/272 (68%), Gaps = 2/272 (0%) Query: 35 LHIRRYSRTGVDWEKAFYLPSVLIVAQGVKTVRLEKETFQIGKSRMFMIPVALPVSLRTI 94 +H R SRT + FY PS+ IVA+G K+V L E ++ S+M ++ V LPV+ + Sbjct: 1 MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVT 60 Query: 95 QANAEQPFIGIGLTLDPEKIAEFVPKVYPRGLPSVQTRCAGYTAEADTGIIHAVTRLIEC 154 +A+ +PF+ + L LDP +I E +VYP GLP V+ +AD I++A TRL+E Sbjct: 61 RASFAEPFLCLKLDLDPRRITELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLEL 120 Query: 155 LHHPSDAELLAPIVKDEILMRLLLSPIGIHIAEMGFADTSVRQVAKAIEWLRSNFDQPMK 214 + DAELLAP+V +EIL+RLL P+G +A++G ++S+ ++A+A++W+R++FDQPM Sbjct: 121 MADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESSMHRIARAVDWVRAHFDQPMN 180 Query: 215 VSELASLSHMSVSVFHKHFKAVTSISPLKYQKELRLQEARNLMLSKQMDAITASQLVGYA 274 V LA L HMS S FH HF+AVTS+SPL+YQK LRL+EAR LML+ +D TA + VGYA Sbjct: 181 VQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA 240 Query: 275 SASQFSRDYRSYFGNPPRRDMAKL--HSRLTS 304 SASQFSR+Y FG P +D+A+L H+ TS Sbjct: 241 SASQFSREYHRLFGRAPTQDIAQLREHASRTS 272 >A2W4C1.1 A2W4C1_9BURK Helix-turn-helix protein Length = 407 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/287 (43%), Positives = 174/287 (60%) Query: 12 SRLVGLINNYVQSDGTFSQPIPGLHIRRYSRTGVDWEKAFYLPSVLIVAQGVKTVRLEKE 71 +RL LI Y DG F P+ G+ I R S W + + +V QG K++R+ Sbjct: 109 ARLAALIATYAPHDGMFDLPLRGMRIARASAPSPQWNHGVHHACLSLVGQGAKSMRVGDA 168 Query: 72 TFQIGKSRMFMIPVALPVSLRTIQANAEQPFIGIGLTLDPEKIAEFVPKVYPRGLPSVQT 131 T+ I +SRM + LPV+ R +AN +PF+ L LDP +IA P V+P GLP Sbjct: 169 TYGIDESRMLVATADLPVTGRVTRANPAEPFLYAQLELDPSRIAALTPVVFPHGLPKAVD 228 Query: 132 RCAGYTAEADTGIIHAVTRLIECLHHPSDAELLAPIVKDEILMRLLLSPIGIHIAEMGFA 191 A T +A I+ AV RL++ + P D +LLAP++ DEIL+RLL P G +A++G A Sbjct: 229 YGALDTLDATPEIVDAVARLMQLIAQPDDLDLLAPLIVDEILIRLLRGPSGARVAQIGDA 288 Query: 192 DTSVRQVAKAIEWLRSNFDQPMKVSELASLSHMSVSVFHKHFKAVTSISPLKYQKELRLQ 251 ++ +++++A+ W+R ++ PM V LA MS S FH HF+AVTS+SPL+ QK LRLQ Sbjct: 289 GSTTQRISRAVAWIRDHYLDPMAVDALARQVEMSPSTFHHHFRAVTSMSPLQCQKVLRLQ 348 Query: 252 EARNLMLSKQMDAITASQLVGYASASQFSRDYRSYFGNPPRRDMAKL 298 EAR LM MDA A + VGY SASQFSR+Y FG+ P RD+A+L Sbjct: 349 EARRLMCLSAMDARQACRSVGYVSASQFSREYARLFGDAPGRDVARL 395 >C0N265.1 C0N265_9GAMM AraC-type transcriptional regulator N-terminus domain protein Length = 302 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/283 (43%), Positives = 180/283 (63%), Gaps = 1/283 (0%) Query: 12 SRLVGLINNYVQSDGTFSQPIPGLHIRRYSRTGVDWEKAFYLPSVLIVAQGVKTVRLEKE 71 ++L LI+ Y +DG F + PG+ + R S + P + IVAQG K V L + Sbjct: 17 NKLAKLISQYAPADGLF-EVCPGVRVLRESSQDAKPARNISQPGMCIVAQGAKRVVLGND 75 Query: 72 TFQIGKSRMFMIPVALPVSLRTIQANAEQPFIGIGLTLDPEKIAEFVPKVYPRGLPSVQT 131 F+ SRM + +P+S I+A+ ++P++ + + + P+K+AE K +P GLP V Sbjct: 76 IFEYDNSRMVVYSTEVPISANIIRASIDEPYLCLIIDITPQKLAELTAKAFPHGLPRVPE 135 Query: 132 RCAGYTAEADTGIIHAVTRLIECLHHPSDAELLAPIVKDEILMRLLLSPIGIHIAEMGFA 191 A + + I+ A RL+E P D +LL P+V DEI +RLL S IG +A++G Sbjct: 136 SRAIHIGPTNPKIVDAGIRLLELFSEPDDVDLLIPLVLDEIFIRLLRSHIGALVAQIGIT 195 Query: 192 DTSVRQVAKAIEWLRSNFDQPMKVSELASLSHMSVSVFHKHFKAVTSISPLKYQKELRLQ 251 D+++++V+K I W+R ++ QPMKV +LA+ +MSVS FH+HFKAVT++SPL++QKELRL Sbjct: 196 DSNLQKVSKGISWVREHYAQPMKVDQLAAHVNMSVSAFHQHFKAVTTMSPLQFQKELRLH 255 Query: 252 EARNLMLSKQMDAITASQLVGYASASQFSRDYRSYFGNPPRRD 294 EA+NLMLSK MD +AS VGYAS SQFSR+Y FG P +D Sbjct: 256 EAKNLMLSKMMDVSSASLQVGYASVSQFSREYSRLFGVSPSKD 298 >Q39PG1.1 Q39PG1_BURS3 Transcriptional regulator, AraC family Length = 354 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 125/290 (43%), Positives = 175/290 (60%) Query: 9 AELSRLVGLINNYVQSDGTFSQPIPGLHIRRYSRTGVDWEKAFYLPSVLIVAQGVKTVRL 68 A +RL LI Y DG F P+ G+ I R S + W + IV QG K+ ++ Sbjct: 53 APTARLAALIAAYAPHDGMFDLPVRGMRIARASASPPHWNHGVLHACLSIVGQGAKSTQV 112 Query: 69 EKETFQIGKSRMFMIPVALPVSLRTIQANAEQPFIGIGLTLDPEKIAEFVPKVYPRGLPS 128 +T+ I +SRM + LPV+ R +A+ +PF+ L LDP +I P+V+P GLP Sbjct: 113 GDDTYVIDESRMLVATADLPVTGRVTRASPAEPFLYAQLELDPARIVALTPRVFPLGLPK 172 Query: 129 VQTRCAGYTAEADTGIIHAVTRLIECLHHPSDAELLAPIVKDEILMRLLLSPIGIHIAEM 188 A T +A I+ AV RL++ + P D +LLAP++ DEIL+RLL P G +A++ Sbjct: 173 AVDCSALDTHDAQPEIVDAVVRLMQLIAQPDDIDLLAPLIVDEILIRLLRGPSGARVAQI 232 Query: 189 GFADTSVRQVAKAIEWLRSNFDQPMKVSELASLSHMSVSVFHKHFKAVTSISPLKYQKEL 248 G AD++ +++++A+ W+R ++ PM V LA MS S FH HF+AVTS+SPL+ QK L Sbjct: 233 GLADSTTQRISRAVAWIRDHYLDPMTVESLARQVDMSPSTFHHHFRAVTSMSPLQCQKVL 292 Query: 249 RLQEARNLMLSKQMDAITASQLVGYASASQFSRDYRSYFGNPPRRDMAKL 298 RLQEAR LM MDA A + VGY SASQFSR+Y FG+ P RD+ KL Sbjct: 293 RLQEARRLMCVSAMDARQACRSVGYVSASQFSREYARLFGDAPGRDVLKL 342 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,674,366,793 Number of extensions: 63539098 Number of successful extensions: 163422 Number of sequences better than 1.0e-05: 1220 Number of HSP's gapped: 163878 Number of HSP's successfully gapped: 1220 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)