BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0002.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1HW54.1 B1HW54_LYSSC Putative phage lipoprotein                       96   1e-18
A5I2K6.1 A5I2K6_CLOBH Putative phage lipoprotein                       90   7e-17
C3KWN8.1 C3KWN8_CLOB6 Putative lipoprotein                             89   8e-17
C1FRZ5.1 C1FRZ5_CLOBJ Putative lipoprotein                             89   1e-16
B1B8T6.1 B1B8T6_CLOBO Putative phage lipoprotein                       84   3e-15

>B1HW54.1 B1HW54_LYSSC Putative phage lipoprotein
          Length = 201

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 27  GKQADSFADIQVKYDNQYEYVTFSTLEDNGGEDFTYSNITNIEPLKNGTLVYLAEVPDEV 86
           G+ +D F ++++ YD +YEY TFST+ED GG DFT++NIT+IEPLK GTL ++A VP++V
Sbjct: 119 GQSSDEFLNVKIIYDGKYEYTTFSTIEDRGGADFTFTNITSIEPLKTGTLHFIASVPEQV 178

Query: 87  QSGDKPLYAEVNIEGEIYRYTIR 109
           +   KPL A + ++G+ Y   IR
Sbjct: 179 EKDGKPLKAIITVKGKKYEQIIR 201


>A5I2K6.1 A5I2K6_CLOBH Putative phage lipoprotein
          Length = 192

 Score = 89.7 bits (221), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 61/84 (72%)

Query: 26  EGKQADSFADIQVKYDNQYEYVTFSTLEDNGGEDFTYSNITNIEPLKNGTLVYLAEVPDE 85
           EGK++D F  ++V YDN+Y+Y TFST+E + G +FTY+NIT IEPLK G + ++AEVP+E
Sbjct: 109 EGKRSDEFLSVKVIYDNKYKYKTFSTIEKDKGTNFTYTNITPIEPLKKGMIHFIAEVPEE 168

Query: 86  VQSGDKPLYAEVNIEGEIYRYTIR 109
           ++  +K L   +N   + ++Y +R
Sbjct: 169 IEKDNKSLVILINANNKEFKYVVR 192


>C3KWN8.1 C3KWN8_CLOB6 Putative lipoprotein
          Length = 192

 Score = 89.4 bits (220), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 61/84 (72%)

Query: 26  EGKQADSFADIQVKYDNQYEYVTFSTLEDNGGEDFTYSNITNIEPLKNGTLVYLAEVPDE 85
           EGK++D F  ++V YDN+Y+Y TFST+E + G +FTY+NIT IEPLK G + ++AEVP+E
Sbjct: 109 EGKRSDEFLSVKVIYDNKYKYKTFSTIEKDKGTNFTYTNITPIEPLKKGMIHFIAEVPEE 168

Query: 86  VQSGDKPLYAEVNIEGEIYRYTIR 109
           ++  +K L   +N   + ++Y +R
Sbjct: 169 IEKDNKSLVILINANNKEFKYVVR 192


>C1FRZ5.1 C1FRZ5_CLOBJ Putative lipoprotein
          Length = 192

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 60/84 (71%)

Query: 26  EGKQADSFADIQVKYDNQYEYVTFSTLEDNGGEDFTYSNITNIEPLKNGTLVYLAEVPDE 85
           EGK++D F  ++V YDN+YEY TFS +E + G +FTY+NIT IEPLK G + ++AEVP+E
Sbjct: 109 EGKRSDGFLSVKVIYDNKYEYKTFSAIEKDEGTNFTYTNITPIEPLKKGMIHFIAEVPEE 168

Query: 86  VQSGDKPLYAEVNIEGEIYRYTIR 109
           ++  +K L   +N   + ++Y +R
Sbjct: 169 IEKDNKSLVVLINANNKEFKYVVR 192


>B1B8T6.1 B1B8T6_CLOBO Putative phage lipoprotein
          Length = 199

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 30  ADSFADIQVKYDNQYEYVTFSTLEDNGGEDFTYSNITNIEPLKNGTLVYLAEVPDEVQSG 89
           AD F  ++V YDN+Y Y TFST+E+NGG +FTY+NI ++EPLK+G + ++AEVP+EV + 
Sbjct: 120 ADRFLKVEVIYDNKYTYSTFSTIEENGGANFTYTNIKSLEPLKSGNVHFIAEVPEEVSTN 179

Query: 90  DKPLYAEVNIEGEIYRYTIR 109
            K +   ++   E  RY  R
Sbjct: 180 TKSVVIVISTNNEELRYNFR 199


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 712,999,207
Number of extensions: 29241012
Number of successful extensions: 50975
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 50975
Number of HSP's successfully gapped: 8
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)