BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0005.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7L2.1 B3K7L2_9BACI Sua5/YciO/YrdC/YwlC family protein              113   5e-24
P39153.1 YWLC_BACSU Uncharacterized protein ywlC                       75   1e-12
B1DEJ1.1 B1DEJ1_9BACL Sua5/YciO/YrdC/YwlC family protein               73   7e-12
A7Z9R4.1 A7Z9R4_BACA2 YwlC                                             71   2e-11
A6TK48.1 A6TK48_ALKMQ Sua5/YciO/YrdC/YwlC family protein               69   1e-10

>B3K7L2.1 B3K7L2_9BACI Sua5/YciO/YrdC/YwlC family protein
          Length = 392

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 65/82 (79%), Gaps = 3/82 (3%)

Query: 18  GEITGLLLFEEHQALYPAGAAACVVSLGSLASPEEGARSLYAALRRFDEAGATYILAEAC 77
           GE+TG+L F+EH   Y   AA   VSLGSLA+PEE AR LYA LRRFDE GAT+ILAEAC
Sbjct: 307 GEVTGVLSFDEHIGHY---AADVAVSLGSLAAPEEAARRLYAGLRRFDEEGATFILAEAC 363

Query: 78  PDTGLGAAIMNRLMKAAGGTVI 99
           PD GLGAA+MNRL+KAAG  +I
Sbjct: 364 PDQGLGAAVMNRLLKAAGHHII 385


>P39153.1 YWLC_BACSU Uncharacterized protein ywlC
          Length = 346

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 11  FQAAQRAGEITGLLLFEEHQALYPAGAAACVVSLGSLASPEEGARSLYAALRRFDEAGAT 70
            Q  Q+ G   G+L  EE   +Y   +A  V S G  A  E  A  LY ALR FDE    
Sbjct: 260 IQEYQQGGRRVGVLTTEEKAGVY---SADYVKSCGRRAQLETVAAGLYDALRSFDENKVD 316

Query: 71  YILAEACPDTGLGAAIMNRLMKAAGGTVI 99
           +I+AE+ PDTG+G AIMNRLMKAAGG VI
Sbjct: 317 FIIAESFPDTGVGLAIMNRLMKAAGGRVI 345


>B1DEJ1.1 B1DEJ1_9BACL Sua5/YciO/YrdC/YwlC family protein
          Length = 356

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 21  TGLLLFEEHQALYPAGAAACVVSLGSLASPEEGARSLYAALRRFDEAGATYILAEACPDT 80
           TG+L F+E  A Y    A  ++S GS   PE+ A +LYAALRRFD  G   I AE C + 
Sbjct: 279 TGVLTFDERAAAY---DADLILSYGSELHPEQAAHNLYAALRRFDSEGIQLIWAEGCSEE 335

Query: 81  GLGAAIMNRLMKAAGGTVI 99
           G+G A+MNRL KAAG  ++
Sbjct: 336 GIGLALMNRLAKAAGHQIV 354


>A7Z9R4.1 A7Z9R4_BACA2 YwlC
          Length = 346

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 8/98 (8%)

Query: 3   KISNFATAFQAAQRAGEITGLLLFEEHQALYPAG-AAACVVSLGSLASPEEGARSLYAAL 61
           +I   A A+++    G+  G+L  EE+   Y A     C    G  A  E  A +LY AL
Sbjct: 255 RIQELADAYKSR---GKRIGILTTEENADSYQADYTKVC----GRRADLETVASALYDAL 307

Query: 62  RRFDEAGATYILAEACPDTGLGAAIMNRLMKAAGGTVI 99
           R FDEA    I++E+ PDTG+G AIMNRLMKAAGGTVI
Sbjct: 308 RSFDEAEVDMIISESFPDTGVGLAIMNRLMKAAGGTVI 345


>A6TK48.1 A6TK48_ALKMQ Sua5/YciO/YrdC/YwlC family protein
          Length = 356

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 51/87 (58%)

Query: 15  QRAGEITGLLLFEEHQALYPAGAAACVVSLGSLASPEEGARSLYAALRRFDEAGATYILA 74
           +  G   G+++ +E  A Y      CV S+GS  +PE  A +L+  LR FDE     IL+
Sbjct: 270 KEKGLSVGVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLFRVLREFDETNVAIILS 329

Query: 75  EACPDTGLGAAIMNRLMKAAGGTVIDA 101
           EA  + G+G A+MNRLMKAAG   I+A
Sbjct: 330 EAVEEVGIGQAVMNRLMKAAGNEKINA 356


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 538,296,213
Number of extensions: 18414726
Number of successful extensions: 64250
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 64299
Number of HSP's successfully gapped: 129
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)