BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0004.p
         (192 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7L1.1 B3K7L1_9BACI Putative uncharacterized protein                107   8e-22
B1DEJ0.1 B1DEJ0_9BACL Putative uncharacterized protein                103   9e-21
C0Z823.1 C0Z823_BREBN Conserved hypothetical membrane protein          84   8e-15
B4AJ82.1 B4AJ82_BACPU Membrane protein YwlD                            70   8e-11
A8FIC5.1 Y3339_BACP2 UPF0059 membrane protein BPUM_3339                70   1e-10

>B3K7L1.1 B3K7L1_9BACI Putative uncharacterized protein
          Length = 187

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 85/141 (60%), Gaps = 3/141 (2%)

Query: 13  GQIVTIAIMAIALGMDAFSLGVGIGMKG-IRLLHVLQLSLLIAFFHVLMPLLGLFTGSYV 71
           GQ+  I +MA+ALG+DAFSLG+G+GM+G +RL H+L +S +IA FH+LMPL GLF G YV
Sbjct: 9   GQLAAILLMAVALGLDAFSLGIGVGMRGGMRLGHMLGISFMIALFHMLMPLAGLFAGRYV 68

Query: 72  GHLLGQVTTYAAXXXXXXXXXHMVFNSFRADHSRREPVNHRTFWGMXXXXXXXXXXXXXX 131
           G LLG VT +AA         HM++N++R    +R  ++   F GM              
Sbjct: 69  GMLLGHVTGFAAGGLLLLLGGHMLYNAWRGGEGQR--IHPTAFLGMLLFSLSVSIDSFSV 126

Query: 132 XXXXGMFVNSITLTVLAFGAC 152
               GMFV+ + L V++FG  
Sbjct: 127 GVSLGMFVDDVLLIVISFGVV 147


>B1DEJ0.1 B1DEJ0_9BACL Putative uncharacterized protein
          Length = 186

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 2/138 (1%)

Query: 13  GQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVG 72
           GQ  T+ IMA+ALGMDAFSLG+GIG+KGIRL  VL+LS +IA FHVLMPL G++ G +V 
Sbjct: 9   GQFATLLIMAVALGMDAFSLGIGIGLKGIRLRDVLRLSSIIALFHVLMPLGGIYAGHFVS 68

Query: 73  HLLGQVTTYAAXXXXXXXXXHMVFNSFRADHSRREPVNHRTFWGMXXXXXXXXXXXXXXX 132
            LLG V T AA         HM+++S + +    + +++R+  G                
Sbjct: 69  GLLGHVATMAAGVLLLLLGGHMIYSSLKGE--TVQTMDYRSSVGTFLFAFSVSIDSFSVG 126

Query: 133 XXXGMFVNSITLTVLAFG 150
              GMF   I LTVL FG
Sbjct: 127 VTLGMFEADILLTVLLFG 144


>C0Z823.1 C0Z823_BREBN Conserved hypothetical membrane protein
          Length = 183

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 60/95 (63%)

Query: 12  WGQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYV 71
           WGQ +T+ I+A AL MDAFSLG+G+GM GIRL  ++++S+ I  FH++MP++G+  G+Y+
Sbjct: 5   WGQFLTLLIIAFALSMDAFSLGIGVGMVGIRLREIIKVSITIGLFHIMMPIIGIVVGAYL 64

Query: 72  GHLLGQVTTYAAXXXXXXXXXHMVFNSFRADHSRR 106
             L+G +  +           HM++N F     + 
Sbjct: 65  SDLVGDIAVFIGGGVLMIIGLHMLWNGFVQGEQKS 99


>B4AJ82.1 B4AJ82_BACPU Membrane protein YwlD
          Length = 184

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 13  GQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVG 72
           G+++T++IMA ALGMDAFS+G+G+GM  +R   ++ + L+I  FH+ MPL G+ TG  + 
Sbjct: 6   GELLTLSIMAFALGMDAFSVGLGMGMIQLRFCQIIYIGLVIGIFHMFMPLFGMLTGQLLS 65

Query: 73  HLLGQVTTYAAXXXXXXXXXHMVFNSFRA-DHSRREPVN 110
             LG + TY            M+  S R  D     PV 
Sbjct: 66  GWLGLLATYIGGALLLVLGLQMIIASIRKEDKPFIAPVG 104


>A8FIC5.1 Y3339_BACP2 UPF0059 membrane protein BPUM_3339
          Length = 184

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 13  GQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVG 72
           G+++T++IMA ALGMDAFS+G+G+GM  +R   ++ + L+I  FH+ MPL G+ TG  + 
Sbjct: 6   GELLTLSIMAFALGMDAFSVGLGMGMIQLRFRQIIYIGLVIGIFHMFMPLFGMLTGQLLS 65

Query: 73  HLLGQVTTYAAXXXXXXXXXHMVFNSFRA-DHSRREPVN 110
             LG + TY            M+  S R  D     PV 
Sbjct: 66  GWLGLLATYIGGALLLVLGLQMIIASIRKEDKPFIAPVG 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.332    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 685,693,607
Number of extensions: 23095947
Number of successful extensions: 71994
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 72126
Number of HSP's successfully gapped: 109
Length of query: 192
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 64
Effective length of database: 1,854,806,283
Effective search space: 118707602112
Effective search space used: 118707602112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)