BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0017.p (190 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE07.1 B3KE07_9BACI Putative uncharacterized protein 168 2e-40 C0Z6E1.1 C0Z6E1_BREBN Putative uncharacterized protein 113 8e-24 Q7ND30.1 Q7ND30_GLOVI Gll4406 protein 95 3e-18 C3KB64.1 C3KB64_PSEFS Putative uncharacterized protein 60 1e-07 C4ERN3.1 C4ERN3_STRRS Conserved protein containing a Zn-ribbon-l... 57 9e-07 >B3KE07.1 B3KE07_9BACI Putative uncharacterized protein Length = 186 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/186 (48%), Positives = 110/186 (59%), Gaps = 3/186 (1%) Query: 1 VLWDDFINSYWRDWRTGDRSKDKDKLQDQEWLAVWLEQHSLRAXXXXXXXXXXXXXXXXX 60 +LWDDFINS W DWR RS D+ L ++WL ++ +H L Sbjct: 1 MLWDDFINSEWHDWRGSGRSVDR--LAREDWLTEFISEHELHVAVPLTSDELELLRQLRS 58 Query: 61 XXXXAVQKLVQDCPPDGDLLERLNGYMLMGPVIRQVVQSVEGKVKISFQPQRPDWEQVMA 120 VQ++V P +E LN +M GPVIRQ+ + K +S+ PQ P + A Sbjct: 59 FLRLCVQRIVAGTLPSRQQVEELNRWMATGPVIRQLKIEEDQKGVLSYIPQNPGLQAAAA 118 Query: 121 EIASSFAAALVEKDTSRFRXXXXNPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRAR 180 EIA SFA A+ + + SRFR NPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRA+ Sbjct: 119 EIAGSFAQAIEQGELSRFRICT-NPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRAK 177 Query: 181 KKAGME 186 KK E Sbjct: 178 KKQQSE 183 >C0Z6E1.1 C0Z6E1_BREBN Putative uncharacterized protein Length = 185 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 4/179 (2%) Query: 5 DFINSYWRDWRTGDRSKDKDKLQDQEWLAVWLEQHSLRAXXXXXXXXXXXXXXXXXXXXX 64 DF+NS WRDWR R +++ L++QEWL+ +L+ ++L A Sbjct: 7 DFLNSDWRDWRGSGRWENR--LENQEWLSSFLQTYNLTAPLPMNEAYAASLLQLRERLRR 64 Query: 65 AVQKLVQDCPPDGDLLERLNGYMLMGPVIRQVVQ-SVEGKVKISFQPQRPDWEQVMAEIA 123 ++ +V+ + L LN + + P QV+ EG + Q W VMA+IA Sbjct: 65 MLEAVVRGDRFQEEDLAELNKVLALAPFHIQVLYVDEEGGYRQKQSSQAEGWPLVMAQIA 124 Query: 124 SSFAAALVEKDTSRFRXXXXNPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRARKK 182 +SFA L + R + N DC WV+YD++RNR +R+CDDKMCGNLMKVRRFR RKK Sbjct: 125 ASFAELLAPQHLERIKICD-NEDCRWVFYDESRNRVRRWCDDKMCGNLMKVRRFRERKK 182 >Q7ND30.1 Q7ND30_GLOVI Gll4406 protein Length = 186 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 4/187 (2%) Query: 1 VLWDDFINSYWRDWRTGDRSKDKDKLQDQEWLAVWLEQHSLRAXXXXXXXXXXXXXXXXX 60 VL + INS D RS+D+ L D +WL +L + L A Sbjct: 3 VLCFELINSERHDHCGSGRSEDR--LSDPDWLVRFLNRWGLAAVEAPDGGELESLVQLRH 60 Query: 61 XXXXAVQKLVQDCPPDGDLLERLNGYMLMGPVIRQVVQSVEGKVKISFQPQRPDWEQVMA 120 V + PP L+ LN + P R++V E ++ P DW V+A Sbjct: 61 LLRRIVDAVAAGEPPAAADLDALNRVLQAAPTSRRLVCCGEEGYRLQLTPVCQDWPWVLA 120 Query: 121 EIASSFAAALVEKDTSRFRXXXXNPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRAR 180 EIA+SFA L + R + NPDC WV++D+++ KR+CDD C NLMKVRRFR R Sbjct: 121 EIAASFAELLGTGNLRRIKICE-NPDCRWVFFDESKCCGKRWCDDG-CANLMKVRRFRKR 178 Query: 181 KKAGMEG 187 ++A G Sbjct: 179 QRAEQTG 185 >C3KB64.1 C3KB64_PSEFS Putative uncharacterized protein Length = 192 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 83 LNGYMLMGPVIRQVVQSVEGKVKISFQPQRPDWEQVMAEIASSFAAALVEKDTSRFRXXX 142 LNG++ Q+ G+V + Q +R EQ ++ IA + A LV+ D + R Sbjct: 93 LNGFLRKAVSHPQLSWPAPGEVHLVRQRKRQTPEQFLSPIAEAAAVLLVDADFNLIRTCE 152 Query: 143 XNPDCLWVYYDDTRNRSKRYCDDKMCGNLMKVRRFRARK 181 +PDC+ +YD T+ +R+C +CGN KV FR RK Sbjct: 153 -HPDCVLWFYDRTKAHKRRWCSMALCGNRHKVAEFRKRK 190 >C4ERN3.1 C4ERN3_STRRS Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding Length = 176 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 108 FQPQRPDWEQVMAEIASSFAAALVEKDTSRFRXXXXNPDCLWVYYDDTRNRSKRYCDDKM 167 F P E + A++ + A LVE + R R PDC V+ D++RNRS+ YCD + Sbjct: 102 FAPGASLGEHLSADLGVALAHLLVEGEWERLRTCSA-PDCGHVFVDESRNRSRVYCDSRT 160 Query: 168 CGNLMKV 174 CGN M V Sbjct: 161 CGNRMHV 167 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,027,087,197 Number of extensions: 31219231 Number of successful extensions: 63810 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 63925 Number of HSP's successfully gapped: 8 Length of query: 190 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 62 Effective length of database: 1,854,806,283 Effective search space: 114997989546 Effective search space used: 114997989546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)