BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0015.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE06.1 B3KE06_9BACI Putative uncharacterized protein 164 2e-39 C0Z6E0.1 C0Z6E0_BREBN Putative uncharacterized protein 143 5e-33 C2N2J6.1 C2N2J6_BACCE Putative uncharacterized protein 133 4e-30 C3H2F4.1 C3H2F4_BACTU Putative uncharacterized protein 132 1e-29 Q81P29.1 Q81P29_BACAN Putative uncharacterized protein 131 2e-29 >B3KE06.1 B3KE06_9BACI Putative uncharacterized protein Length = 156 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 105/158 (66%), Gaps = 6/158 (3%) Query: 7 ISDVLLQNWDYVMDIEDWAPPLSAALEGVTSEQAVWKPQGEAGNSIWETVNHLTYYKERX 66 + ++LLQNW+Y MD EDW PP+ AL+ VT EQA+WKP+GEA NSIWE V HL YYKER Sbjct: 3 MKELLLQNWNYAMDQEDWYPPILPALKEVTLEQALWKPEGEAANSIWENVQHLLYYKERL 62 Query: 67 XXXXXXXXXXXEAESNDATFTVTESGEEAWGHAVAKLKQVHASLREVIEALEEGAYDWGG 126 E ND TF + ++ EEAW A +L++VHA+LR+ E + E + Sbjct: 63 LGRLEGRPLHNEGIGNDETFLIHDTSEEAWDTARKQLQEVHATLRQKFEGMTEAEIE--- 119 Query: 127 SGHAPGEEVMSLILHDSYHTGQIVLVRKLQGSWPTNRS 164 +P + ++SLI+HD+YHTGQIV +RKLQGSWP RS Sbjct: 120 --ESP-QRILSLIMHDAYHTGQIVFIRKLQGSWPARRS 154 >C0Z6E0.1 C0Z6E0_BREBN Putative uncharacterized protein Length = 164 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 2/159 (1%) Query: 9 DVLLQNWDYVMDIEDWAPPLSAALEGVTSEQAVWKPQGEAGNSIWETVNHLTYYKERXXX 68 ++LL W+ D EDW PPL AL G+++ +A W+P GEA N+IWE V+HL YYKER Sbjct: 5 ELLLHGWECAYDKEDWYPPLKEALSGISAAEASWRPVGEAANTIWENVSHLLYYKERLLH 64 Query: 69 XXXXXXXXXEAESNDATFTVT--ESGEEAWGHAVAKLKQVHASLREVIEALEEGAYDWGG 126 AE+ND TFT + + E+AW + K++ VH + E + L + + Sbjct: 65 RLLGTEFPGSAETNDDTFTPSGGPADEDAWQATLLKMESVHRHIHEQLSLLTDEELNQMA 124 Query: 127 SGHAPGEEVMSLILHDSYHTGQIVLVRKLQGSWPTNRSF 165 + + VMSL+LHD++HTGQIV VRKLQGSWPT RSF Sbjct: 125 TYTPIYQNVMSLVLHDAFHTGQIVQVRKLQGSWPTRRSF 163 >C2N2J6.1 C2N2J6_BACCE Putative uncharacterized protein Length = 163 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 22 EDWAPPLSAALEGVTSEQAVWKPQGEAGNSIWETVNHLTYYKERXXXXXXXXXXXXEAES 81 E+W PP+S AL+ +T+EQA WKP+G A N+IWE VNHL +KER ++ Sbjct: 18 EEWYPPISEALKNLTAEQACWKPEGAASNTIWENVNHLLIFKERLLSRLHEDNTFVAPQN 77 Query: 82 NDATFTVTESGEE-AWGHAVAKLKQVHASLREVIEALEEGAYDWGGSGHAPGEEVMSLIL 140 ND TF E ++ AW V + QVH +L+ + AL+E D ++ M+++L Sbjct: 78 NDETFIQGEPNDDNAWQQTVKRTLQVHDALQSSLTALQEAELDQLSPSLPVWQQYMNILL 137 Query: 141 HDSYHTGQIVLVRKLQGSWPTNRSF 165 HD+YHTGQI+ +RKLQGSWPT+RS+ Sbjct: 138 HDAYHTGQIIQLRKLQGSWPTHRSY 162 >C3H2F4.1 C3H2F4_BACTU Putative uncharacterized protein Length = 163 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 22 EDWAPPLSAALEGVTSEQAVWKPQGEAGNSIWETVNHLTYYKERXXXXXXXXXXXXEAES 81 E+W PP+S AL+ +T+EQA W+P+G A N+IWE VNHL +KER ++ Sbjct: 18 EEWYPPISEALKNLTAEQACWQPEGAASNTIWENVNHLLIFKERLLSRLHEDNTFVAPQN 77 Query: 82 NDATFTVTESGEE-AWGHAVAKLKQVHASLREVIEALEEGAYDWGGSGHAPGEEVMSLIL 140 ND TF E ++ AW V + QVH +L+ + AL+E D ++ M+++L Sbjct: 78 NDETFIQGEPNDDNAWQQTVKRTLQVHDALQSSLTALQEAELDQLSPSLPVWQQYMNILL 137 Query: 141 HDSYHTGQIVLVRKLQGSWPTNRSF 165 HD+YHTGQI+ +RKLQGSWPT+RS+ Sbjct: 138 HDAYHTGQIIQLRKLQGSWPTHRSY 162 >Q81P29.1 Q81P29_BACAN Putative uncharacterized protein Length = 162 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 89/144 (61%) Query: 22 EDWAPPLSAALEGVTSEQAVWKPQGEAGNSIWETVNHLTYYKERXXXXXXXXXXXXEAES 81 E W PP+S AL+ +T+EQA W+P+G A N+IWE VNHL +KER ++ Sbjct: 18 EKWYPPISEALKNLTAEQACWQPEGAASNTIWENVNHLLIFKERLLSRIHEDDTFVAPQN 77 Query: 82 NDATFTVTESGEEAWGHAVAKLKQVHASLREVIEALEEGAYDWGGSGHAPGEEVMSLILH 141 ND TF+ ++AW V + QVH +L+ + + +E D ++ M+++LH Sbjct: 78 NDDTFSQGGPNDDAWQQTVKRTLQVHDALQSSLTSFQEAELDQPKPSLPIWQQYMNILLH 137 Query: 142 DSYHTGQIVLVRKLQGSWPTNRSF 165 D+YHTGQI+ +RKLQGSWPT+RS+ Sbjct: 138 DAYHTGQIIQLRKLQGSWPTHRSY 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.128 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 930,168,961 Number of extensions: 32129657 Number of successful extensions: 63363 Number of sequences better than 1.0e-05: 112 Number of HSP's gapped: 63303 Number of HSP's successfully gapped: 112 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 126 (53.1 bits)