BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0012.p
         (116 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE05.1 B3KE05_9BACI Putative uncharacterized protein                145   8e-34
B1D5N3.1 B1D5N3_9BACL Putative uncharacterized protein                137   3e-31
C0ZK34.1 C0ZK34_BREBN Putative uncharacterized protein                105   1e-21

>B3KE05.1 B3KE05_9BACI Putative uncharacterized protein
          Length = 116

 Score =  145 bits (367), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 80/108 (74%)

Query: 1   MRYVILQQHQELQFVEMPEEYAYQLSALNLRLNKEIDKLTADNVPDLPLAIAECDXXXXX 60
           MRYVIL+   EL FVEMP +YAYQLSALNLRLNKEIDKLTA   P LPLA+AECD     
Sbjct: 4   MRYVILKGQDELFFVEMPSDYAYQLSALNLRLNKEIDKLTAAGKPQLPLAVAECDHLDLM 63

Query: 61  XXXXXXXXGLAYINRLESAFSSIQESNYPLISLLTEIRALQAQLEQWY 108
                   GL YIN LE AF+S+ E  YPLISLLTEIRALQAQLEQWY
Sbjct: 64  QESLSIQGGLEYINELEQAFASLNEKEYPLISLLTEIRALQAQLEQWY 111


>B1D5N3.1 B1D5N3_9BACL Putative uncharacterized protein
          Length = 116

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 81/108 (75%)

Query: 1   MRYVILQQHQELQFVEMPEEYAYQLSALNLRLNKEIDKLTADNVPDLPLAIAECDXXXXX 60
           MR V++    ++ FVEMPE +AYQLSALNLRL+KEIDKLTAD+VP LP A+AECD     
Sbjct: 4   MRNVLMNGSSQIFFVEMPESHAYQLSALNLRLHKEIDKLTADHVPQLPYAVAECDNVELH 63

Query: 61  XXXXXXXXGLAYINRLESAFSSIQESNYPLISLLTEIRALQAQLEQWY 108
                   GL YIN LE  F++++ES YPLI+LLTEIRALQAQLEQWY
Sbjct: 64  DSSIRIVSGLDYINELERDFAAVKESAYPLIALLTEIRALQAQLEQWY 111


>C0ZK34.1 C0ZK34_BREBN Putative uncharacterized protein
          Length = 112

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 69/105 (65%)

Query: 1   MRYVILQQHQELQFVEMPEEYAYQLSALNLRLNKEIDKLTADNVPDLPLAIAECDXXXXX 60
           MRY++LQ    LQFV +PE + YQL AL  RL KEIDKLT    P+LP  +A+C      
Sbjct: 1   MRYLLLQSSDGLQFVSLPETHMYQLIALLKRLYKEIDKLTITERPELPTVLADCADVERL 60

Query: 61  XXXXXXXXGLAYINRLESAFSSIQESNYPLISLLTEIRALQAQLE 105
                   GL Y++ LE  F+++QE+ YPLISLLTEIRALQAQLE
Sbjct: 61  GNELSIVDGLEYVSGLERRFAALQETEYPLISLLTEIRALQAQLE 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 467,943,971
Number of extensions: 12316863
Number of successful extensions: 33398
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 33398
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 3,060,696,203
Length adjustment: 83
Effective length of query: 33
Effective length of database: 2,278,751,958
Effective search space: 75198814614
Effective search space used: 75198814614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)