BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0011.p (161 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE04.1 B3KE04_9BACI Putative uncharacterized protein 231 1e-59 B1D5N2.1 B1D5N2_9BACL Putative uncharacterized protein 228 2e-58 C0ZK36.1 C0ZK36_BREBN Putative uncharacterized protein ydcK 189 7e-47 Q9JWQ2.1 SPRTL_BACHD Protein sprT-like 178 2e-43 C2WY56.1 C2WY56_BACCE SprT family metallopeptidase 174 2e-42 >B3KE04.1 B3KE04_9BACI Putative uncharacterized protein Length = 167 Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 126/157 (80%), Gaps = 3/157 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 MSNEELQ W+E++S +SF VPFRH+A+FN RLS+TGGRYF+KSH+IEINP QL GREE Sbjct: 6 MSNEELQAWVEKISLESFRVPFRHQATFNRRLSSTGGRYFMKSHHIEINPHQLATHGREE 65 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKA---RKPLPYRY 117 E+IIKHELCHYHLH++ RGY HRDADFKKLL VGGSRFC++LP KA R+P PYRY Sbjct: 66 VEKIIKHELCHYHLHIAGRGYRHRDADFKKLLQAVGGSRFCKSLPKGKAAGRRQPEPYRY 125 Query: 118 KLVCTACATEYPRKRKADPKRYRCGNCAGKLKLVALE 154 L C C TEY RKRK DP RYRCG C G+L L+ L+ Sbjct: 126 MLRCGDCGTEYLRKRKMDPARYRCGKCGGRLTLLKLD 162 >B1D5N2.1 B1D5N2_9BACL Putative uncharacterized protein Length = 157 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 103/150 (68%), Positives = 121/150 (80%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M++E+LQ+W+E+VS +SFG PF H+A+FN RL TGGRYF KSHNIEI+P QLE FG EE Sbjct: 5 MNDEQLQRWVERVSLESFGRPFIHQATFNGRLKATGGRYFTKSHNIEISPHQLEAFGEEE 64 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 TE+IIKHELCHYHLH+ KRGY HRD DFKKLLA VGGSR+C +LP A+ P PY+Y LV Sbjct: 65 TEKIIKHELCHYHLHIMKRGYQHRDEDFKKLLAYVGGSRYCNSLPERAAKAPTPYKYMLV 124 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKL 150 C +C TEYPRKR+ DP RY CG C GKL L Sbjct: 125 CRSCGTEYPRKRRLDPARYACGKCRGKLFL 154 >C0ZK36.1 C0ZK36_BREBN Putative uncharacterized protein ydcK Length = 153 Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 90/153 (58%), Positives = 107/153 (69%), Gaps = 2/153 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M++ ELQ +EQ+S + F PFRH+A FNSRL TTGGRY ++SH+IE+NP L+ G EE Sbjct: 1 MTDTELQMLVEQISSEFFAKPFRHQARFNSRLRTTGGRYLLRSHDIELNPKHLQEHGVEE 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 IIKHELCHYHLH+ KRGY H D DF+ LL VGGSR+CQ + R LPYRY+LV Sbjct: 61 LIAIIKHELCHYHLHIEKRGYRHADRDFQLLLRHVGGSRYCQQV--GSGRTTLPYRYELV 118 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLVAL 153 C C Y RKRK +P RYRCG C GKL L L Sbjct: 119 CKECGMSYKRKRKMNPSRYRCGRCKGKLLLREL 151 >Q9JWQ2.1 SPRTL_BACHD Protein sprT-like Length = 151 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 104/151 (68%), Gaps = 2/151 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M+ +ELQQ +E +S SFG+ FRHKA FN RL TTGGRY + SH+IE+NP LE+FG +E Sbjct: 1 MTEQELQQLVEDISLKSFGMKFRHKARFNPRLRTTGGRYLLHSHDIELNPKHLELFGLDE 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 IIKHELCHYHLHL K+GY HRDADFK LL V R+C +P A+ + R+ V Sbjct: 61 LIGIIKHELCHYHLHLQKKGYHHRDADFKLLLKEVDAPRYCAKIP--HAQNSVKTRHLYV 118 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLV 151 CT C T + RKR+ D RY CG C G+LK + Sbjct: 119 CTGCGTRFERKREVDTSRYVCGKCNGRLKKI 149 >C2WY56.1 C2WY56_BACCE SprT family metallopeptidase Length = 154 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 3/152 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M +E+QQ +E+VS FG+PF HKA FN+RL TTGGRY +KSHNIE+N EM+G+EE Sbjct: 3 MDEKEIQQLVEEVSLRYFGMPFLHKAMFNNRLRTTGGRYLLKSHNIELNYRYYEMYGKEE 62 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 IIKHELCHYHLH++ RGY HRD DF++LL VG RFC+ + + K + Y Sbjct: 63 LVGIIKHELCHYHLHITGRGYKHRDRDFRELLKKVGAPRFCKRIINEEKEKKV---YMYE 119 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLVA 152 C C+ +Y R+R+ + KRY CGNC GKLK VA Sbjct: 120 CMECSLQYVRRRQINTKRYVCGNCKGKLKPVA 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 965,275,705 Number of extensions: 35558429 Number of successful extensions: 69025 Number of sequences better than 1.0e-05: 247 Number of HSP's gapped: 68781 Number of HSP's successfully gapped: 247 Length of query: 161 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 40 Effective length of database: 1,920,753,388 Effective search space: 76830135520 Effective search space used: 76830135520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)