BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0010.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HQ30.1 B1HQ30_LYSSC Quinolone resistance protein 171 4e-41 A3I9S3.1 A3I9S3_9BACI Putative uncharacterized protein 167 4e-40 B3KJM8.1 B3KJM8_9BACI Pentapeptide repeat protein 166 1e-39 C3BYT2.1 C3BYT2_BACTU Quinolone resistance protein 154 5e-36 C3GFB2.1 C3GFB2_BACTU Quinolone resistance protein 154 6e-36 >B1HQ30.1 B1HQ30_LYSSC Quinolone resistance protein Length = 214 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 129/211 (61%), Gaps = 4/211 (1%) Query: 8 KIDPPKITEENALLPQQIHTLQSKEE--ISHCLISDSLIEYQEADRVSFDKVIFRNVTVT 65 +I PKI + L + +EE +S+C+I+D++I+ + +R+ KVIF+NVT Sbjct: 6 QITSPKIPTD--LEKANFQAIYDEEEPYLSNCMIADTVIDKEVVERLIVAKVIFKNVTFI 63 Query: 66 ESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRFQNVRIVDCIGD 125 S+ +++TDVIFENCDLSN+N ++ +HR F+NCKL+G +FS NV +C+ Sbjct: 64 NSSFKKMDVTDVIFENCDLSNLNLKESLIHRVVFKNCKLLGVNFSEANLGNVSFENCMAT 123 Query: 126 FASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECDIDQATFAGCRLKEIDLSDCSFT 185 ++F + K +F N L ++Y+ + L + F ECDI++ F LK ID+S C+F Sbjct: 124 LSNFPEARLKQVLFHNTNLQGANYFDSLLKKVAFQECDINEVDFTETSLKGIDISTCTFK 183 Query: 186 GLHVDIEDLAGCIISAEQAASFAGLLGLVIK 216 L V +E L GC +S+EQA FA LLGL +K Sbjct: 184 RLQVSLESLNGCEVSSEQAIGFASLLGLTVK 214 >A3I9S3.1 A3I9S3_9BACI Putative uncharacterized protein Length = 214 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 117/183 (63%) Query: 34 ISHCLISDSLIEYQEADRVSFDKVIFRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAF 93 +S+C+I+D++I+ + +R+ KVIF+NVT S+ +++TDVIFENCDLSN+N ++ Sbjct: 32 LSNCMIADTVIDKEAVERLIVSKVIFKNVTFINSSFIKMDVTDVIFENCDLSNLNLKESL 91 Query: 94 VHRTEFRNCKLIGTDFSRGRFQNVRIVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAE 153 +HR F+NCKL+G +FS NV +C+ ++F + K VF N L ++Y+ Sbjct: 92 IHRVVFKNCKLLGVNFSEANLGNVFFENCMATLSNFPEARLKQVVFDNTNLQGANYFDCL 151 Query: 154 LTHIGFSECDIDQATFAGCRLKEIDLSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGL 213 L + F ECDI++ F LK ID+S C+F L V +E L GC +S+EQA FA LLGL Sbjct: 152 LNKVAFHECDINEVDFTETSLKGIDISTCTFKRLQVSLESLNGCEVSSEQAIGFASLLGL 211 Query: 214 VIK 216 +K Sbjct: 212 TVK 214 >B3KJM8.1 B3KJM8_9BACI Pentapeptide repeat protein Length = 223 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/176 (44%), Positives = 111/176 (63%) Query: 41 DSLIEYQEADRVSFDKVIFRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFR 100 D + Y A++V FD++IF NVT TLH ELTD++F +CDLSNV+ S+A ++R +F Sbjct: 47 DETLVYVTANKVQFDQMIFDNVTFQHVTLHHAELTDLVFNHCDLSNVDLSEAIMYRVQFN 106 Query: 101 NCKLIGTDFSRGRFQNVRIVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFS 160 +CK++G D + +NV C GD+A+FRF K F + LV SD+Y +EL+ + F Sbjct: 107 HCKILGLDLTAATIRNVVFDHCTGDYATFRFANMKQVSFQSTSLVKSDFYHSELSKVEFM 166 Query: 161 ECDIDQATFAGCRLKEIDLSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGLVIK 216 +C IDQ+ F+G +L IDLS F + +EDL GCIIS QA + GLV+K Sbjct: 167 DCQIDQSQFSGTKLAGIDLSRTDFHHIGATLEDLQGCIISPHQAIPLTKIFGLVVK 222 >C3BYT2.1 C3BYT2_BACTU Quinolone resistance protein Length = 217 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 123/218 (56%), Gaps = 4/218 (1%) Query: 1 MEANMSNKIDPPKITEENALLPQQIHTLQSKEE--ISHCLISDSLIEYQEADRVSFDKVI 58 M+ + KID PKI+ E +L + H + +E+ + C I DS E + DRV + Sbjct: 1 MKEGYNMKIDRPKISPELSL--KSFHDIFYEEDPTLEMCEIIDSTFENESVDRVRLYNAV 58 Query: 59 FRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRFQNVR 118 +N T + I++TDV FENCDLSNVN S++ VHR EF+N KLIG +F+ NV Sbjct: 59 IKNCKFTNTDFSNIDITDVCFENCDLSNVNLSNSSVHRVEFKNSKLIGVNFTESSLGNVE 118 Query: 119 IVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECDIDQATFAGCRLKEID 178 + I + ASF K + +F L ++D++ +L + F C +D+A F LK ID Sbjct: 119 FENSILNLASFGNSKLEKIIFNKTSLNNADFFDCKLKKVEFDSCSLDEANFDQTSLKGID 178 Query: 179 LSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGLVIK 216 +S +F L V + DL GC +S QA FA LLGL+IK Sbjct: 179 ISSSTFDTLTVSVNDLRGCKVSPYQAIQFASLLGLIIK 216 >C3GFB2.1 C3GFB2_BACTU Quinolone resistance protein Length = 217 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 123/218 (56%), Gaps = 4/218 (1%) Query: 1 MEANMSNKIDPPKITEENALLPQQIHTLQSKEE--ISHCLISDSLIEYQEADRVSFDKVI 58 M+ + KID PKI+ E +L + H + +E+ + C I DS E + DRV + Sbjct: 1 MKEGYNMKIDRPKISPELSL--KSFHDIFYEEDPTLEMCEIIDSTFENESVDRVRLYSAV 58 Query: 59 FRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRFQNVR 118 +N T + I++TDV FENCDLSNVN S++ VHR EF+N KLIG +F+ NV Sbjct: 59 IKNCKFTNTDFSNIDITDVCFENCDLSNVNLSNSSVHRVEFKNSKLIGVNFTESSLGNVE 118 Query: 119 IVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECDIDQATFAGCRLKEID 178 + I + ASF K + +F L ++D++ +L + F C +D+A F LK ID Sbjct: 119 FENSILNLASFGNSKLEKIIFNETSLNNADFFDCKLKKVEFDSCSLDEANFDQTSLKGID 178 Query: 179 LSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGLVIK 216 +S +F L V + DL GC +S QA FA LLGL+IK Sbjct: 179 ISSSTFDTLTVSVNDLRGCKVSPYQAIQFASLLGLIIK 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,210,824,107 Number of extensions: 47150031 Number of successful extensions: 121059 Number of sequences better than 1.0e-05: 317 Number of HSP's gapped: 119182 Number of HSP's successfully gapped: 323 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)