BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0008.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC86.1 B3KC86_9BACI Putative beta-lactamase 327 5e-88 B1D806.1 B1D806_9BACL Putative beta-lactamase 311 4e-83 C0ZJU6.1 C0ZJU6_BREBN Putative uncharacterized protein 255 3e-66 B4AIY4.1 B4AIY4_BACPU YddR 243 1e-62 C3EVA6.1 C3EVA6_BACTK Beta-lactamase domain protein 240 1e-61 >B3KC86.1 B3KC86_9BACI Putative beta-lactamase Length = 254 Score = 327 bits (839), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 152/249 (61%), Positives = 190/249 (76%), Gaps = 2/249 (0%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNARRNPLVPLPGPVQQWLAPD 66 +K+QLIRNA L ++Y + LVDPM S+ +ANPP+ NS N RRNPLVPLP + L P+ Sbjct: 3 VKLQLIRNATLRIQYAHLELLVDPMFSDAKANPPVFNSANDRRNPLVPLPFSMADKLRPN 62 Query: 67 AVLVTHLHQDHWDEAAVSLLPHELPVLCQDGDEGTLSAQGFGHVSVVEDHAAKNFRGVTL 126 AVLVTHLH DHWD+ A+ LP P+LCQ GDE TLS+QGF V+ V + + + G+++ Sbjct: 63 AVLVTHLHPDHWDQDAIDALPKSTPILCQPGDEDTLSSQGFASVTAVSE--SFEYEGISI 120 Query: 127 KRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVIIVNA 186 RTGGRHGTGEIG++MG+VSGF+ +AEG P LY+AGDTIWCDEVK ALD HKP++ +VNA Sbjct: 121 IRTGGRHGTGEIGQMMGQVSGFILKAEGHPTLYIAGDTIWCDEVKEALDAHKPDMTVVNA 180 Query: 187 GGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEGLLGR 246 GGA+FL G I M+E D+IEL RYAP +AVHMEAINHCLVTRE L+ RL EGL R Sbjct: 181 GGARFLAGDPIIMDEDDVIELLRYAPYTKAVAVHMEAINHCLVTREALSGRLAAEGLGSR 240 Query: 247 VKIPADGEW 255 ++IP DG+W Sbjct: 241 IEIPQDGQW 249 >B1D806.1 B1D806_9BACL Putative beta-lactamase Length = 252 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 145/248 (58%), Positives = 181/248 (72%), Gaps = 2/248 (0%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNARRNPLVPLPGPVQQWLAPD 66 + IQLIR+A LWL+Y G+ FLVDPM SE NPPI NS N R NPLVPLP ++ L P+ Sbjct: 1 MNIQLIRHATLWLDYAGVRFLVDPMFSEAGVNPPIMNSTNDRCNPLVPLPFHTEKLLQPE 60 Query: 67 AVLVTHLHQDHWDEAAVSLLPHELPVLCQDGDEGTLSAQGFGHVSVVEDHAAKNFRGVTL 126 +LV+HLH DHWD AA+ LP P+ CQ GD ++ Q F +V+ + ++G+T+ Sbjct: 61 VILVSHLHPDHWDAAAIEALPKSTPLFCQPGDAAAITGQYFANVTEIGQSVL--YKGITI 118 Query: 127 KRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVIIVNA 186 RT GRHGTGEIGE MG+VSGF+ +A+GEP LY+AGDTIWCDEVK ALD KP+V +VNA Sbjct: 119 SRTNGRHGTGEIGEKMGQVSGFILQADGEPTLYIAGDTIWCDEVKHALDAFKPDVAVVNA 178 Query: 187 GGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEGLLGR 246 GGAQF G ITMN +D+I++CRYAP V+AVHM+ INHCLVTR+ LA L E LL + Sbjct: 179 GGAQFAVGDPITMNAEDVIQICRYAPSTKVVAVHMDTINHCLVTRDVLAEALSAENLLDQ 238 Query: 247 VKIPADGE 254 V IPADG+ Sbjct: 239 VLIPADGQ 246 >C0ZJU6.1 C0ZJU6_BREBN Putative uncharacterized protein Length = 252 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 129/249 (51%), Positives = 172/249 (69%), Gaps = 3/249 (1%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNARRNPLVPLPGPVQQWLA-P 65 ++IQL+R+A L +EY G TFLVDPM S + P +PN+PN R NP V LP V++ LA Sbjct: 1 MQIQLVRHATLRVEYAGQTFLVDPMFSSKGELPAVPNTPNQRPNPGVELPISVEEVLAGV 60 Query: 66 DAVLVTHLHQDHWDEAAVSLLPHELPVLCQDGDEGTLSAQGFGHVSVVEDHAAKNFRGVT 125 DAVLVTH H DH DEAA+ LLP LPV CQ D L G V +E+ A ++G+ Sbjct: 61 DAVLVTHTHFDHLDEAAIRLLPKHLPVFCQPPDREKLVQHGLEQVIAIEE--AYTWQGIH 118 Query: 126 LKRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVIIVN 185 L RTGG+HGTGEIG+ MG+VSGFV + GE LYVAGDTIWC+EV+ A+ E++P+ I+V Sbjct: 119 LHRTGGQHGTGEIGQQMGQVSGFVLQRAGEQTLYVAGDTIWCEEVEQAIAEYRPDTIVVF 178 Query: 186 AGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEGLLG 245 AG A+FLTG ITM ++DI+ + P++ ++ HME NHCL++R +L L+++ L G Sbjct: 179 AGAARFLTGDPITMTKEDIVHVANAVPDSRILVAHMETWNHCLLSRRELNECLQEKQLSG 238 Query: 246 RVKIPADGE 254 RV +P DGE Sbjct: 239 RVHVPQDGE 247 >B4AIY4.1 B4AIY4_BACPU YddR Length = 254 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/252 (47%), Positives = 165/252 (65%), Gaps = 6/252 (2%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNAR-RNPLVPLPG--PVQQWL 63 +KI LIRNA +LEYG TF +DP L+ + PP P++ N NP+V LP + L Sbjct: 1 MKITLIRNATFYLEYGQATFFIDPFLAAKGTYPPFPHTANQHLNNPIVDLPVNIDIDNML 60 Query: 64 APDAVLVTHLHQDHWDEAAVSLLPHELPVLCQ-DGDEGTLSAQGFGHVSVVEDHAAKNFR 122 PDAVL+THLH DH+D+ A L + P+ Q D D+ + GF HV+ +ED + Sbjct: 61 HPDAVLLTHLHVDHFDDEAKQKLDQDQPIYTQSDNDKKEVEEAGFQHVTCIEDEI--DIY 118 Query: 123 GVTLKRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVI 182 GV ++RTGG+HGTGEI + MG+VSGFVF EP LY+AGDTIWCDE K ++ KP+VI Sbjct: 119 GVHIQRTGGQHGTGEIAKRMGQVSGFVFSHPDEPTLYIAGDTIWCDEPKEVINTCKPDVI 178 Query: 183 IVNAGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEG 242 +VN+G AQFL G ITM ++DI+++ R P A ++A H+EA+NHCL+TR L A +++ Sbjct: 179 VVNSGAAQFLEGDPITMTKEDILDVHRSHPTAQIVATHLEAVNHCLLTRASLQAYIQEHQ 238 Query: 243 LLGRVKIPADGE 254 + +P DGE Sbjct: 239 AAQAIFVPNDGE 250 >C3EVA6.1 C3EVA6_BACTK Beta-lactamase domain protein Length = 252 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 170/250 (68%), Gaps = 4/250 (1%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNAR-RNPLVPLPGPVQQWLAP 65 + I+LIRNA L + Y FL+DP L+++ + PP PN+PN RNPLV LP +++ + Sbjct: 1 MDIRLIRNATLVVHYADKKFLIDPFLADKGSIPPFPNTPNQDMRNPLVSLPISIEEIIQV 60 Query: 66 DAVLVTHLHQDHWDEAAVSLLPHELPVLCQD-GDEGTLSAQGFGHVSVVEDHAAKNFRGV 124 DAV++THLH DH+DE A +LP ++ + Q+ D ++ +GF ++ ++ N + Sbjct: 61 DAVIITHLHPDHFDEVAKKVLPKDIKIYAQNEHDIEAINKEGFHNIESLQ--HVTNIEEI 118 Query: 125 TLKRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVIIV 184 L +T G+HGTGEI + G+VSG VF EP LYVAGDTIWC++V+ A+D H PEVI++ Sbjct: 119 KLFKTNGQHGTGEITKFTGEVSGIVFNHPDEPRLYVAGDTIWCNDVQQAIDTHDPEVIVI 178 Query: 185 NAGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEGLL 244 N G AQFL GG ITM ++DI + + AP+A +I HME++NHCL+TR++L ++++GL Sbjct: 179 NGGAAQFLEGGPITMTKEDIYDTKQAAPQAKIIVSHMESLNHCLLTRKELNDFIDKKGLS 238 Query: 245 GRVKIPADGE 254 + +P+DGE Sbjct: 239 NTILVPSDGE 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,724,264,531 Number of extensions: 75947165 Number of successful extensions: 193987 Number of sequences better than 1.0e-05: 147 Number of HSP's gapped: 193778 Number of HSP's successfully gapped: 147 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)