BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0003.p (253 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3IYD9.1 C3IYD9_9BACI ABC transporter related 357 5e-97 B7Y8I8.1 B7Y8I8_9BACI ABC transporter related protein 357 5e-97 A4ISG8.1 A4ISG8_GEOTN Putative branched chain amino acid ABC tra... 355 2e-96 B4BMW9.1 B4BMW9_9BACI ABC transporter-related protein 355 2e-96 Q5KVM4.1 Q5KVM4_GEOKA Branched-chain amino acid ABC transporter ... 354 3e-96 >C3IYD9.1 C3IYD9_9BACI ABC transporter related Length = 259 Score = 357 bits (917), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 170/251 (67%), Positives = 207/251 (82%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+ + FGGLKALS V++ + +GEL+GLIGPNGAGKTTLFNLLTGVY P+ G I+L Sbjct: 7 LLKAENVGIQFGGLKALSGVTMELYQGELVGLIGPNGAGKTTLFNLLTGVYVPTDGRIML 66 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E++ G+ PYKI KG +RTFQNIRLF ++VL+NVK+A+H HARHS+ +S+LRLP HF Sbjct: 67 DGETLNGLPPYKITRKGISRTFQNIRLFGELSVLDNVKVAYHAHARHSIASSILRLPSHF 126 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 +GE E+ +KA++ LKIF L G E A NL YG QRRLEIARALAA PK+LLLDEPAAGM Sbjct: 127 RGEKEMEEKAIEFLKIFQLDGVMHEKAKNLPYGQQRRLEIARALAAQPKVLLLDEPAAGM 186 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET++LM LIA+IR+ F LTILLIEHDMSLVMG+C+RIYVLD G LIA GTP ++RSN Sbjct: 187 NPQETKELMKLIAFIRERFALTILLIEHDMSLVMGICERIYVLDHGQLIAEGTPEQVRSN 246 Query: 242 PKVIEAYLGQE 252 PKVIEAYLG+E Sbjct: 247 PKVIEAYLGEE 257 >B7Y8I8.1 B7Y8I8_9BACI ABC transporter related protein Length = 259 Score = 357 bits (917), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 170/251 (67%), Positives = 207/251 (82%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+ + FGGLKALS V++ + +GEL+GLIGPNGAGKTTLFNLLTGVY P+ G I+L Sbjct: 7 LLKAENVGIQFGGLKALSGVTMELYQGELVGLIGPNGAGKTTLFNLLTGVYVPTDGRIML 66 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E++ G+ PYKI KG +RTFQNIRLF ++VL+NVK+A+H HARHS+ +S+LRLP HF Sbjct: 67 DGETLNGLPPYKITRKGISRTFQNIRLFGELSVLDNVKVAYHAHARHSIASSILRLPSHF 126 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 +GE E+ +KA++ LKIF L G E A NL YG QRRLEIARALAA PK+LLLDEPAAGM Sbjct: 127 RGEKEMEEKAIEFLKIFQLDGVMHEKAKNLPYGQQRRLEIARALAAQPKVLLLDEPAAGM 186 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET++LM LIA+IR+ F LTILLIEHDMSLVMG+C+RIYVLD G LIA GTP ++RSN Sbjct: 187 NPQETKELMKLIAFIRERFALTILLIEHDMSLVMGICERIYVLDHGQLIAEGTPEQVRSN 246 Query: 242 PKVIEAYLGQE 252 PKVIEAYLG+E Sbjct: 247 PKVIEAYLGEE 257 >A4ISG8.1 A4ISG8_GEOTN Putative branched chain amino acid ABC transporter ATP-binding protein Length = 259 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 172/252 (68%), Positives = 207/252 (82%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+ + FGGLKALS V + + GELIGLIGPNGAGKTTLFNLLTGVY P+ G IIL Sbjct: 7 LLKAEGIGIQFGGLKALSGVDMELYHGELIGLIGPNGAGKTTLFNLLTGVYVPTEGRIIL 66 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E++ G+ PYKI KG +RTFQNIRLF ++VL+NVK+A+H HARHS+ +S+LRLP H Sbjct: 67 DGETLNGLPPYKITRKGISRTFQNIRLFGELSVLDNVKVAYHTHARHSMMSSILRLPSHI 126 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 +GE E+ +KA++ LKIFNL E A NL YG QRRLEIARALAA PKLLLLDEPAAGM Sbjct: 127 RGEREMEEKAIEFLKIFNLDEVMHEQAKNLPYGQQRRLEIARALAAQPKLLLLDEPAAGM 186 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET++LMNLIA+IR++F LTILLIEHDMSLVMG+C+RIYVLD G LIA+GTP ++R+N Sbjct: 187 NPQETKELMNLIAFIREQFALTILLIEHDMSLVMGICERIYVLDHGQLIAHGTPEDVRNN 246 Query: 242 PKVIEAYLGQEA 253 PKVIEAYLG+E Sbjct: 247 PKVIEAYLGEEV 258 >B4BMW9.1 B4BMW9_9BACI ABC transporter-related protein Length = 259 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 172/252 (68%), Positives = 207/252 (82%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+ + FGGLKALS V + + GELIGLIGPNGAGKTTLFNLLTGVY P+ G IIL Sbjct: 7 LLKAEGIGIQFGGLKALSGVDMELYHGELIGLIGPNGAGKTTLFNLLTGVYVPTEGRIIL 66 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E++ G+ PYKI KG +RTFQNIRLF ++VL+NVK+A+H HARHS+ +S+LRLP H Sbjct: 67 DGETLNGLPPYKITRKGISRTFQNIRLFGELSVLDNVKVAYHTHARHSMMSSILRLPSHI 126 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 +GE E+ +KA++ LKIFNL E A NL YG QRRLEIARALAA PKLLLLDEPAAGM Sbjct: 127 RGEREMEEKAIEFLKIFNLDEVMHEQAKNLPYGQQRRLEIARALAAQPKLLLLDEPAAGM 186 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET++LMNLIA+IR++F LTILLIEHDMSLVMG+C+RIYVLD G LIA+GTP ++R+N Sbjct: 187 NPQETKELMNLIAFIREQFALTILLIEHDMSLVMGICERIYVLDHGQLIAHGTPEDVRNN 246 Query: 242 PKVIEAYLGQEA 253 PKVIEAYLG+E Sbjct: 247 PKVIEAYLGEEV 258 >Q5KVM4.1 Q5KVM4_GEOKA Branched-chain amino acid ABC transporter (ATP-binding protein) Length = 259 Score = 354 bits (909), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 169/251 (67%), Positives = 206/251 (82%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+ + FGGLKALS V++ + +GEL+GLIGPNGAGKTTLFNLLTGVY P+ G I+L Sbjct: 7 LLKAENVGIQFGGLKALSGVTMELYQGELVGLIGPNGAGKTTLFNLLTGVYVPTDGRIML 66 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E++ G+ PYKI KG +RTFQNIRLF ++VL+NVK+A+H HARHS+ +S+LRLP HF Sbjct: 67 DGETLNGLPPYKITRKGISRTFQNIRLFGELSVLDNVKVAYHAHARHSIASSILRLPSHF 126 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 +GE E+ +KA++ L IF L G E A NL YG QRRLEIARALAA PK+LLLDEPAAGM Sbjct: 127 RGEKEMEEKAIEFLNIFQLDGVMHEKAKNLPYGQQRRLEIARALAAQPKVLLLDEPAAGM 186 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET++LM LIA+IR+ F LTILLIEHDMSLVMG+C+RIYVLD G LIA GTP ++RSN Sbjct: 187 NPQETKELMKLIAFIRERFALTILLIEHDMSLVMGICERIYVLDHGQLIAEGTPEQVRSN 246 Query: 242 PKVIEAYLGQE 252 PKVIEAYLG+E Sbjct: 247 PKVIEAYLGEE 257 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,455,093,903 Number of extensions: 57996348 Number of successful extensions: 567348 Number of sequences better than 1.0e-05: 88259 Number of HSP's gapped: 451101 Number of HSP's successfully gapped: 96063 Length of query: 253 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 120 Effective length of database: 1,807,701,208 Effective search space: 216924144960 Effective search space used: 216924144960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)