BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0002.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KVM5.1 Q5KVM5_GEOKA Branched-chain amino acid ABC transporter ... 296 1e-78 C3IYD8.1 C3IYD8_9BACI ABC transporter related 296 1e-78 B7Y8I9.1 B7Y8I9_9BACI ABC transporter related protein 296 1e-78 B0TFK9.1 B0TFK9_HELMI Branched-chain amino acid abc transporter,... 296 1e-78 B1HNP7.1 B1HNP7_LYSSC High-affinity branched-chain amino acid tr... 295 2e-78 >Q5KVM5.1 Q5KVM5_GEOKA Branched-chain amino acid ABC transporter (ATP-binding protein) Length = 235 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/233 (63%), Positives = 179/233 (76%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLKV GI+V+YG IHALK +S+EV +GEIVTLIGANGA I + Sbjct: 1 MLKVDGIDVFYGNIHALKGVSLEVNKGEIVTLIGANGAGKTTLLKTISGLLRPKNGDIVY 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYL-QNPSSLAADFERVYKT 119 SI ++ Q+IVKQG+ H PEGRRVFANM+VEENLELGA+L ++ + DF +V++ Sbjct: 61 EGASIAGKAAQTIVKQGISHVPEGRRVFANMTVEENLELGAFLRKDKEGIQQDFAKVFQL 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ER+KQ AGTLSGGEQQMLA+GRALM PKLLLLDEPSMGLAPLLV+ IF+I++E+ Sbjct: 121 FPRLEERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSMGLAPLLVKTIFRIIQEI 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N +GTT+LLVEQNAH AL IAHRAYVLE+GRVVL G A EL SE++K AYLG Sbjct: 181 NESGTTILLVEQNAHMALSIAHRAYVLESGRVVLSGTASELQASEQVKQAYLG 233 >C3IYD8.1 C3IYD8_9BACI ABC transporter related Length = 235 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/233 (63%), Positives = 179/233 (76%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLKV GI+V+YG IHALK +S+EV +GEIVTLIGANGA I + Sbjct: 1 MLKVDGIDVFYGNIHALKGVSLEVNKGEIVTLIGANGAGKTTLLKTISGLLRPKNGDIVY 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYL-QNPSSLAADFERVYKT 119 SI ++ Q+IVKQG+ H PEGRRVFANM+VEENLELGA+L ++ + DF +V++ Sbjct: 61 EGASIAGKAAQTIVKQGISHVPEGRRVFANMTVEENLELGAFLRKDKEGIQQDFAKVFQL 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ER+KQ AGTLSGGEQQMLA+GRALM PKLLLLDEPSMGLAPLLV+ IF+I++E+ Sbjct: 121 FPRLEERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSMGLAPLLVKTIFRIIQEI 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N +GTT+LLVEQNAH AL IAHRAYVLE+GRVVL G A EL SE++K AYLG Sbjct: 181 NESGTTILLVEQNAHMALSIAHRAYVLESGRVVLSGTASELQASEQVKQAYLG 233 >B7Y8I9.1 B7Y8I9_9BACI ABC transporter related protein Length = 235 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/233 (63%), Positives = 179/233 (76%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLKV GI+V+YG IHALK +S+EV +GEIVTLIGANGA I + Sbjct: 1 MLKVDGIDVFYGNIHALKGVSLEVNKGEIVTLIGANGAGKTTLLKTISGLLRPKNGDIVY 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYL-QNPSSLAADFERVYKT 119 SI ++ Q+IVKQG+ H PEGRRVFANM+VEENLELGA+L ++ + DF +V++ Sbjct: 61 EGASIAGKAAQTIVKQGISHVPEGRRVFANMTVEENLELGAFLRKDKEGIQQDFAKVFQL 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ER+KQ AGTLSGGEQQMLA+GRALM PKLLLLDEPSMGLAPLLV+ IF+I++E+ Sbjct: 121 FPRLEERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSMGLAPLLVKTIFRIIQEI 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N +GTT+LLVEQNAH AL IAHRAYVLE+GRVVL G A EL SE++K AYLG Sbjct: 181 NESGTTILLVEQNAHMALSIAHRAYVLESGRVVLSGTASELQASEQVKQAYLG 233 >B0TFK9.1 B0TFK9_HELMI Branched-chain amino acid abc transporter, ATP-binding protein Length = 234 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/233 (63%), Positives = 175/233 (75%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 ML V+ ++VYYGAIHALK +S+EV+QGEIVTLIGANGA I F Sbjct: 1 MLTVKDLHVYYGAIHALKGISLEVRQGEIVTLIGANGAGKTTTLHTLSGLIKPKSGVIRF 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYL-QNPSSLAADFERVYKT 119 D+ I + Q IV G+ PEGRR+FANMSV ENLELGA+L ++ + D E+V+ Sbjct: 61 QDQDIAGMAAQKIVAMGMSQVPEGRRIFANMSVLENLELGAFLRKDKDGIKEDMEKVFTR 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ER Q AGTLSGGEQQMLAMGRALM PKL+LLDEPSMGLAPLLVQ+IF I+KE+ Sbjct: 121 FPRLKERTSQLAGTLSGGEQQMLAMGRALMSRPKLMLLDEPSMGLAPLLVQEIFAIIKEI 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N AGTT+LLVEQNAH AL IAH+AYVLETG++VL G AKELA+SEE+K AYLG Sbjct: 181 NEAGTTILLVEQNAHMALSIAHKAYVLETGKIVLSGPAKELAESEEVKKAYLG 233 >B1HNP7.1 B1HNP7_LYSSC High-affinity branched-chain amino acid transport ATP-binding protein Length = 235 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 149/233 (63%), Positives = 180/233 (77%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLKVQ I+VYYG I ALK LS+EV +GEIVTLIGANGA IE+ Sbjct: 1 MLKVQNIDVYYGNIQALKGLSLEVNEGEIVTLIGANGAGKSTLLKTLSGLLKPKGGIIEY 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYLQN-PSSLAADFERVYKT 119 SI ++ Q+IVK G+ H PEGRRVFANMSVEENLELGAYL+N + + D + V++ Sbjct: 61 EGFSIAGKAAQTIVKSGISHVPEGRRVFANMSVEENLELGAYLRNDKAGIKKDMDHVFEL 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL+ER+KQ +GTLSGGEQQMLAMGRALM PKLLL+DEPSMGLAPL+V++IF I+++V Sbjct: 121 FPRLMERRKQLSGTLSGGEQQMLAMGRALMAKPKLLLMDEPSMGLAPLMVKNIFNIIEQV 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N GTTVLLVEQNA+ AL +A+RAYVLETGR+VL G AKEL +SE++K AYLG Sbjct: 181 NKEGTTVLLVEQNANMALSVANRAYVLETGRIVLSGSAKELQESEQVKAAYLG 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,134,339,229 Number of extensions: 39561674 Number of successful extensions: 336755 Number of sequences better than 1.0e-05: 46047 Number of HSP's gapped: 316069 Number of HSP's successfully gapped: 49670 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)