BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0001.p (399 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1HSL7.1 A1HSL7_9FIRM Extracellular ligand-binding receptor 457 e-127 B0TFK5.1 B0TFK5_HELMI Branched chain amino acid abc transporter,... 432 e-119 A1HMQ7.1 A1HMQ7_9FIRM Extracellular ligand-binding receptor 431 e-119 A1HRK6.1 A1HRK6_9FIRM Extracellular ligand-binding receptor 428 e-118 A4ISH1.1 A4ISH1_GEOTN Branched-chain amino acid ABC transporter ... 417 e-115 >A1HSL7.1 A1HSL7_9FIRM Extracellular ligand-binding receptor Length = 391 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/357 (61%), Positives = 275/357 (77%), Gaps = 3/357 (0%) Query: 43 IKIGADLELTGGQASFGDSASKGAKLAVQQINDAGGILGKKLELVVADNASKSEEATQVA 102 IK+G +LELTGG A+FG+S + G KLA +++N AGG+LGK+L + ADN S+ E+T Sbjct: 38 IKVGGNLELTGGVATFGNSVANGVKLAFKEVNAAGGVLGKQLVFIAADNKSEPSESTNAI 97 Query: 103 QKLITTDKVVTIIGASTSTNTLGIVPVATEKEIPLVSVGATNPKVTVDERTSKVNDWVFR 162 KLIT DKVV +IGA STNTL V VA + +IPL++ +TNP+VTV+ KV +WVFR Sbjct: 98 TKLITKDKVVAVIGAVASTNTLAAVQVAQDNKIPLITPTSTNPRVTVE--NGKVREWVFR 155 Query: 163 AAFIDPFQGQVMANFAVDSLKAKTAVIYTDTSSDYSKGLQKFFEETFKSKGGEVLSQESY 222 + FIDPFQG VMANFA SL AKTA IYTD SSDYSKGL + FE+TF GG+++++E++ Sbjct: 156 SCFIDPFQGSVMANFASKSLNAKTAAIYTDNSSDYSKGLTEVFEQTFTKNGGKIVAKEAF 215 Query: 223 QQKDSDFKAVLTRIKAANPDVIYLPGYYEEVGKILKQAREMGITAPFLGGDGWDSPQLAE 282 QKD DFKA LT+IKAANPDVI++P YYEEVGKI+KQARE+GIT P LG DGWDSP+L E Sbjct: 216 LQKDQDFKAALTKIKAANPDVIFIPAYYEEVGKIVKQARELGITVPLLGADGWDSPKLVE 275 Query: 283 IAGADALNDTYMSNHYSPEDTATEVTSFVDAYKAANGGAVPDGMAALGYDALKLVADAIT 342 IAGA ALN+ Y SNHYSPED V FV+AYK G VPD +AALGYDA L+ DAI Sbjct: 276 IAGAAALNNVYFSNHYSPEDKDPRVVKFVEAYKKEY-GQVPDALAALGYDAAMLLVDAIK 334 Query: 343 RAGAADPAKIKDALAATKDLQLATGKITLNETHDPVKAAVVLKFVDGKQTFETKVNP 399 RAG+A+PAKIKDALA TK+LQL +G I+L+ H+PVK+A +++ DGKQ F+ K+NP Sbjct: 335 RAGSAEPAKIKDALAQTKNLQLVSGVISLDANHNPVKSAAIIELKDGKQIFKEKINP 391 >B0TFK5.1 B0TFK5_HELMI Branched chain amino acid abc transporter, amino acid-binding protein Length = 397 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/355 (58%), Positives = 266/355 (74%), Gaps = 1/355 (0%) Query: 45 IGADLELTGGQASFGDSASKGAKLAVQQINDAGGILGKKLELVVADNASKSEEATQVAQK 104 IG + EL+GGQA+FG +A GAK+ ++N GGI GKK+ VV DN S++ E+T VA K Sbjct: 43 IGGNFELSGGQATFGKAAVNGAKMVFDKVNAEGGINGKKIRFVVLDNKSEATESTNVATK 102 Query: 105 LITTDKVVTIIGASTSTNTLGIVPVATEKEIPLVSVGATNPKVTVDERTSKVNDWVFRAA 164 LI ++K V I+G +TS +TLG+V +A +K+IP++S ATNPKVTVDE T K ND++FRA Sbjct: 103 LINSEKAVAILGCTTSGDTLGMVQLAMDKKIPVLSTSATNPKVTVDENTKKTNDFIFRAC 162 Query: 165 FIDPFQGQVMANFAVDSLKAKTAVIYTDTSSDYSKGLQKFFEETFKSKGGEVLSQESYQQ 224 FIDPFQG VMANF +++LK KTA + TD + YSKGL +FF+E+F GGE+++ E Y Sbjct: 163 FIDPFQGTVMANFTLNNLKLKTAAVLTDNQAPYSKGLAQFFKESFVKGGGEIVADEGYVT 222 Query: 225 KDSDFKAVLTRIKAANPDVIYLPGYYEEVGKILKQAREMGITAPFLGGDGWDSPQLAEIA 284 D DFKA LT+I+ NPDV+Y+PGYYEEVGKI+KQARE+G+T P +GGDGWDSP+L EIA Sbjct: 223 GDQDFKATLTKIRGKNPDVLYVPGYYEEVGKIVKQARELGMTMPIMGGDGWDSPKLTEIA 282 Query: 285 GADALNDTYMSNHYSPEDTATEVTSFVDAYKAANGGAVPDGMAALGYDALKLVADAITRA 344 GA ALN+T+ SNHYS EDT V FV YK G VPD MA LGYD ++ DA+ RA Sbjct: 283 GAAALNNTFFSNHYSSEDTDPLVVDFVKRYKELY-GEVPDSMAVLGYDGALIMVDALKRA 341 Query: 345 GAADPAKIKDALAATKDLQLATGKITLNETHDPVKAAVVLKFVDGKQTFETKVNP 399 G +P KIK+ALAATKD+Q TGKI+ +E H+P+KAA +++ DGKQTF+ KV P Sbjct: 342 GEPNPLKIKEALAATKDVQTVTGKISYDEQHNPIKAAAIIEMKDGKQTFKDKVAP 396 >A1HMQ7.1 A1HMQ7_9FIRM Extracellular ligand-binding receptor Length = 388 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/357 (58%), Positives = 267/357 (74%), Gaps = 1/357 (0%) Query: 43 IKIGADLELTGGQASFGDSASKGAKLAVQQINDAGGILGKKLELVVADNASKSEEATQVA 102 IK+GA+ E+TG A+FG SA+ GAKLA++++N GG+LGK+L L+VADN S++ EA Sbjct: 33 IKLGANFEMTGSNATFGQSAANGAKLAIKEVNAKGGVLGKQLTLIVADNKSEAAEAANAM 92 Query: 103 QKLITTDKVVTIIGASTSTNTLGIVPVATEKEIPLVSVGATNPKVTVDERTSKVNDWVFR 162 QKL+T DKVV ++ S++ + V + ++ +S A+NPKVTVD T KV +++FR Sbjct: 93 QKLVTQDKVVAVLAPIASSSVIAAAQVNQDNKVLAISPTASNPKVTVDPATGKVREFLFR 152 Query: 163 AAFIDPFQGQVMANFAVDSLKAKTAVIYTDTSSDYSKGLQKFFEETFKSKGGEVLSQESY 222 AAFIDPFQG VMANFA SLKAKTA +Y D SSDY+KGL ++F+ETF GG ++++E+Y Sbjct: 153 AAFIDPFQGAVMANFATKSLKAKTAALYIDNSSDYAKGLGQYFKETFIKNGGTIVAEEAY 212 Query: 223 QQKDSDFKAVLTRIKAANPDVIYLPGYYEEVGKILKQAREMGITAPFLGGDGWDSPQLAE 282 QKD+DFKA LT+IKA NPDVI++PGYY+EVG I+KQARE+GI P LGGDGWDS +L E Sbjct: 213 LQKDTDFKATLTKIKAKNPDVIFVPGYYQEVGMIIKQARELGINVPILGGDGWDSAKLPE 272 Query: 283 IAGADALNDTYMSNHYSPEDTATEVTSFVDAYKAANGGAVPDGMAALGYDALKLVADAIT 342 IAGA ALN+T+ SNHYSP+DT+ V +FV+ YK G VPD AAL YDA +V AI Sbjct: 273 IAGAAALNNTFFSNHYSPDDTSPAVKTFVENYK-KEYGQVPDAFAALSYDATMMVIKAIE 331 Query: 343 RAGAADPAKIKDALAATKDLQLATGKITLNETHDPVKAAVVLKFVDGKQTFETKVNP 399 RAG+ DP KIKD LA TKD +G ITLN THD VK+AV+++ DGKQTF KVNP Sbjct: 332 RAGSTDPVKIKDELAKTKDFPAVSGNITLNATHDAVKSAVIIEMKDGKQTFREKVNP 388 >A1HRK6.1 A1HRK6_9FIRM Extracellular ligand-binding receptor Length = 390 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/357 (58%), Positives = 264/357 (73%), Gaps = 1/357 (0%) Query: 43 IKIGADLELTGGQASFGDSASKGAKLAVQQINDAGGILGKKLELVVADNASKSEEATQVA 102 IKIG ELTG ASFG +A+ GAKLA ++IN GGILGK+++LV+ADN S+ E+ Sbjct: 35 IKIGVVYELTGNTASFGTAAANGAKLAFKEINAKGGILGKQVQLVIADNKSEPSESANAM 94 Query: 103 QKLITTDKVVTIIGASTSTNTLGIVPVATEKEIPLVSVGATNPKVTVDERTSKVNDWVFR 162 K+IT DKVV + G +TS+N + VA +IP V+ TNPKVTVDE T KV D+ FR Sbjct: 95 TKVITQDKVVAVTGFTTSSNGIAASNVAESYKIPFVAAATTNPKVTVDENTGKVKDYTFR 154 Query: 163 AAFIDPFQGQVMANFAVDSLKAKTAVIYTDTSSDYSKGLQKFFEETFKSKGGEVLSQESY 222 FIDPFQG V ANFA+++LK K I D SSDYSKGL KFF++ F GG ++++E+Y Sbjct: 155 VCFIDPFQGTVGANFALNTLKVKKVAILIDNSSDYSKGLAKFFKDAFVKGGGVIVAEEAY 214 Query: 223 QQKDSDFKAVLTRIKAANPDVIYLPGYYEEVGKILKQAREMGITAPFLGGDGWDSPQLAE 282 QKD DFK VLT+IK A P++IY+PGYYEEVGKI+KQ RE+GIT PF+GGDGWDSP+L E Sbjct: 215 LQKDQDFKTVLTKIKVAGPEMIYVPGYYEEVGKIIKQGRELGITVPFVGGDGWDSPKLPE 274 Query: 283 IAGADALNDTYMSNHYSPEDTATEVTSFVDAYKAANGGAVPDGMAALGYDALKLVADAIT 342 IAGA LN TY +NHYS EDT+ + +FV+AY+ G +PD MA LGYDA ++ADAI Sbjct: 275 IAGAANLNGTYFTNHYSVEDTSPKSKAFVEAYQKEY-GQLPDAMAVLGYDAAYVLADAIK 333 Query: 343 RAGAADPAKIKDALAATKDLQLATGKITLNETHDPVKAAVVLKFVDGKQTFETKVNP 399 RAG+ DPAKI++ALAATKD TGK+TLN THD VK+AV+++F DGKQ + VNP Sbjct: 334 RAGSTDPAKIREALAATKDFDGVTGKLTLNATHDAVKSAVIIEFKDGKQVYRATVNP 390 >A4ISH1.1 A4ISH1_GEOTN Branched-chain amino acid ABC transporter amino acid-binding protein Length = 401 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/357 (57%), Positives = 269/357 (75%), Gaps = 4/357 (1%) Query: 43 IKIGADLELTGGQASFGDSASKGAKLAVQQINDAGGILGKKLELVVADNASKSEEATQVA 102 IKIGA+LEL+GG AS+G S ++G +LA +IN G I GKKLELV DN S++ EAT A Sbjct: 49 IKIGANLELSGGVASYGQSIAEGVELAFDEINKEG-INGKKLELVKVDNKSEAAEATNGA 107 Query: 103 QKLITTDKVVTIIGASTSTNTLGIVPVATEKEIPLVSVGATNPKVTVDERTSKVNDWVFR 162 KLI+ DKVV I+G++TSTNTL V +A + ++P+++ TNP +T + KVND++FR Sbjct: 108 IKLISQDKVVAIVGSATSTNTLAQVQIANDNKVPVITPSGTNPTITT--KDGKVNDFIFR 165 Query: 163 AAFIDPFQGQVMANFAVDSLKAKTAVIYTDTSSDYSKGLQKFFEETFKSKGGEVLSQESY 222 FIDPFQG V A FA+D LK K+A I D++SDYSKGL F+ETF + GG+++++E+Y Sbjct: 166 TCFIDPFQGTVAAKFALDDLKVKSAAILIDSASDYSKGLAASFKETFTAGGGKIVAEEAY 225 Query: 223 QQKDSDFKAVLTRIKAANPDVIYLPGYYEEVGKILKQAREMGITAPFLGGDGWDSPQLAE 282 KD+DF+A LT IKAANP+ ++LPGYYEEVG I+KQARE+G+ P +GGDGWDSP+L E Sbjct: 226 VAKDTDFRATLTNIKAANPEFLFLPGYYEEVGLIVKQARELGLNVPIMGGDGWDSPKLIE 285 Query: 283 IAGADALNDTYMSNHYSPEDTATEVTSFVDAYKAANGGAVPDGMAALGYDALKLVADAIT 342 IAG DALN+TY++NHYS D ++ FV A++A A PD ALGYD +ADAI Sbjct: 286 IAGKDALNNTYITNHYSSGDPDPKIQEFVKAFEAKYNKA-PDAFNALGYDTAYFLADAIK 344 Query: 343 RAGAADPAKIKDALAATKDLQLATGKITLNETHDPVKAAVVLKFVDGKQTFETKVNP 399 RAG+ADP KIKDALA TKDLQL TG T+NE HDP+K+AV+L++ DG+Q F+TKVNP Sbjct: 345 RAGSADPVKIKDALAQTKDLQLVTGIFTINENHDPIKSAVILEYKDGQQQFKTKVNP 401 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,038,244,670 Number of extensions: 80389776 Number of successful extensions: 230472 Number of sequences better than 1.0e-05: 3416 Number of HSP's gapped: 224820 Number of HSP's successfully gapped: 3423 Length of query: 399 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 261 Effective length of database: 1,760,596,133 Effective search space: 459515590713 Effective search space used: 459515590713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)