BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0008.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2WD33.1 C2WD33_BACCE Putative uncharacterized protein                192   1e-47
C2ZW86.1 C2ZW86_BACCE Putative uncharacterized protein                191   1e-47
C3BQZ2.1 C3BQZ2_9BACI Putative uncharacterized protein                191   2e-47
C3B8X0.1 C3B8X0_BACMY Putative uncharacterized protein                191   2e-47
C3ARM8.1 C3ARM8_BACMY Putative uncharacterized protein                191   2e-47

>C2WD33.1 C2WD33_BACCE Putative uncharacterized protein
          Length = 113

 Score =  192 bits (487), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 102/113 (90%)

Query: 6   MNELPNCPQCSSEYTYEDGMLLVCPECGHEWAQSAGNASSEESKVVRDANGNILNDGDSV 65
           M  LPNCP+C+SEYTYEDG L VCPEC HEWA  +   + E++KVV+DANGNILNDGD+V
Sbjct: 1   MQNLPNCPKCNSEYTYEDGSLFVCPECAHEWALGSDTENGEDTKVVKDANGNILNDGDAV 60

Query: 66  TVIKDLKVKGSSSVLKIGTKVKNIRLVEGDHDIDCKIDGFGAMKLKSEFVRKA 118
           TVIKDLKVKG+SSV+KIGTKVK+IRLV+GDHDIDCKIDGFGAMKLKSEFV+KA
Sbjct: 61  TVIKDLKVKGTSSVIKIGTKVKSIRLVDGDHDIDCKIDGFGAMKLKSEFVKKA 113


>C2ZW86.1 C2ZW86_BACCE Putative uncharacterized protein
          Length = 120

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 103/116 (88%)

Query: 3   NVIMNELPNCPQCSSEYTYEDGMLLVCPECGHEWAQSAGNASSEESKVVRDANGNILNDG 62
           N  M  LPNCP+C+SEYTYEDG+L VCPEC HEW + A   S+E +KVV+DANGN+L DG
Sbjct: 5   NEFMATLPNCPKCNSEYTYEDGVLFVCPECAHEWGKEAEAESNEGAKVVKDANGNVLQDG 64

Query: 63  DSVTVIKDLKVKGSSSVLKIGTKVKNIRLVEGDHDIDCKIDGFGAMKLKSEFVRKA 118
           D+VTVIKDLKVKG+SSV+KIGTKVK+IRLVEGDHDIDCKIDGFGAMKLKS+FV+KA
Sbjct: 65  DAVTVIKDLKVKGTSSVVKIGTKVKSIRLVEGDHDIDCKIDGFGAMKLKSQFVKKA 120


>C3BQZ2.1 C3BQZ2_9BACI Putative uncharacterized protein
          Length = 113

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 101/113 (89%)

Query: 6   MNELPNCPQCSSEYTYEDGMLLVCPECGHEWAQSAGNASSEESKVVRDANGNILNDGDSV 65
           M  LPNCP+C+SEYTYEDG L VCPEC HEWA  +   +SE  KVV+DANGNILNDGD+V
Sbjct: 1   MQNLPNCPKCNSEYTYEDGSLFVCPECAHEWALESETENSEGKKVVKDANGNILNDGDAV 60

Query: 66  TVIKDLKVKGSSSVLKIGTKVKNIRLVEGDHDIDCKIDGFGAMKLKSEFVRKA 118
           TVIKDLKVKG+SSV+KIGTKVK+IRLV+GDHDIDCKIDGFGAMKLKSEFV+KA
Sbjct: 61  TVIKDLKVKGTSSVIKIGTKVKSIRLVDGDHDIDCKIDGFGAMKLKSEFVKKA 113


>C3B8X0.1 C3B8X0_BACMY Putative uncharacterized protein
          Length = 113

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 101/113 (89%)

Query: 6   MNELPNCPQCSSEYTYEDGMLLVCPECGHEWAQSAGNASSEESKVVRDANGNILNDGDSV 65
           M  LPNCP+C+SEYTYEDG L VCPEC HEWA  +   +SE  KVV+DANGNILNDGD+V
Sbjct: 1   MQNLPNCPKCNSEYTYEDGSLFVCPECAHEWALESETENSEGKKVVKDANGNILNDGDAV 60

Query: 66  TVIKDLKVKGSSSVLKIGTKVKNIRLVEGDHDIDCKIDGFGAMKLKSEFVRKA 118
           TVIKDLKVKG+SSV+KIGTKVK+IRLV+GDHDIDCKIDGFGAMKLKSEFV+KA
Sbjct: 61  TVIKDLKVKGTSSVIKIGTKVKSIRLVDGDHDIDCKIDGFGAMKLKSEFVKKA 113


>C3ARM8.1 C3ARM8_BACMY Putative uncharacterized protein
          Length = 113

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 101/113 (89%)

Query: 6   MNELPNCPQCSSEYTYEDGMLLVCPECGHEWAQSAGNASSEESKVVRDANGNILNDGDSV 65
           M  LPNCP+C+SEYTYEDG L VCPEC HEWA  +   +SE  KVV+DANGNILNDGD+V
Sbjct: 1   MQNLPNCPKCNSEYTYEDGSLFVCPECAHEWALESETENSEGKKVVKDANGNILNDGDAV 60

Query: 66  TVIKDLKVKGSSSVLKIGTKVKNIRLVEGDHDIDCKIDGFGAMKLKSEFVRKA 118
           TVIKDLKVKG+SSV+KIGTKVK+IRLV+GDHDIDCKIDGFGAMKLKSEFV+KA
Sbjct: 61  TVIKDLKVKGTSSVIKIGTKVKSIRLVDGDHDIDCKIDGFGAMKLKSEFVKKA 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 676,532,602
Number of extensions: 23339024
Number of successful extensions: 61199
Number of sequences better than 1.0e-05: 810
Number of HSP's gapped: 60617
Number of HSP's successfully gapped: 810
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)