BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0006.p
         (105 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q8TSE5.1 Q8TSE5_METAC Bacitracin ABC transporter, ATP-binding pr...   118   2e-25
A6TPG5.1 A6TPG5_ALKMQ ABC transporter related                         108   1e-22
A3CPP5.1 A3CPP5_STRSV Bacitracin ABC transporter, ATP-binding pr...   102   1e-20
Q97DF7.1 Q97DF7_CLOAB ABC-type transport system, ATPase component     100   3e-20
B3KFD8.1 B3KFD8_9BACI ABC transporter related                         100   5e-20

>Q8TSE5.1 Q8TSE5_METAC Bacitracin ABC transporter, ATP-binding protein
          Length = 314

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 70/85 (82%)

Query: 1   LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
           L+K FG  HAVN +SL V +GEIYGFLGL+GAGKTTTIRMLLGMI+P  G++Y+ G+ V+
Sbjct: 17  LSKDFGDLHAVNSISLCVGKGEIYGFLGLSGAGKTTTIRMLLGMIKPTSGAAYLNGKLVN 76

Query: 61  ADSHKLWASVGYMVETPYSYPELTV 85
           A   +LW +VGY+VE PYSYP+LTV
Sbjct: 77  AGETELWKNVGYLVELPYSYPDLTV 101


>A6TPG5.1 A6TPG5_ALKMQ ABC transporter related
          Length = 315

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%), Gaps = 1/83 (1%)

Query: 3   KHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVDAD 62
           K FG    +N LSLEVN+GEI+GFLGLNGAGKTTTI+MLLGM++P  G  Y+ GE+VDA 
Sbjct: 21  KSFGEYKVLNNLSLEVNRGEIFGFLGLNGAGKTTTIKMLLGMLKPTSGKLYMLGEKVDAG 80

Query: 63  SHKLWASVGYMVETPYSYPELTV 85
           ++KLW  VGY+ E  + YP+LTV
Sbjct: 81  NYKLWDKVGYLEEATF-YPDLTV 102


>A3CPP5.1 A3CPP5_STRSV Bacitracin ABC transporter, ATP-binding protein,
          putative
          Length = 317

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 65/85 (76%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          L+K +G+ + VN L+L +  GEI GFLGLNGAGKTTT+RM+LG+I+   G  Y+ G+++D
Sbjct: 11 LSKRYGTKNVVNNLNLSIKPGEIVGFLGLNGAGKTTTMRMMLGLIKSTSGECYIQGKKLD 70

Query: 61 ADSHKLWASVGYMVETPYSYPELTV 85
            + +L   +GY++ETPYSYP+LTV
Sbjct: 71 LSNLELRNEIGYIIETPYSYPDLTV 95


>Q97DF7.1 Q97DF7_CLOAB ABC-type transport system, ATPase component
          Length = 314

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          LTK +GS ++   ++L  N+GEIYGFLGLNGAGKTTT+RMLL MIRP  G  Y  G+ + 
Sbjct: 9  LTKSYGSKNSAFNINLTANEGEIYGFLGLNGAGKTTTMRMLLKMIRPTSGEIYYSGQSIS 68

Query: 61 ADSHKLWASVGYMVETPYSYPELTV 85
              + W  VGY++ETP++YP  TV
Sbjct: 69 KLPSEFWNQVGYLIETPHAYPNFTV 93


>B3KFD8.1 B3KFD8_9BACI ABC transporter related
          Length = 315

 Score =  100 bits (249), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          LTK +G+   V+ +S+ V +GEIYGFLGLNGAGKTTTIR LLGM +P  G  Y+FG+R  
Sbjct: 10 LTKQYGNKVIVDRVSISVKKGEIYGFLGLNGAGKTTTIRALLGMSKPSSGEVYLFGQRWA 69

Query: 61 ADSHKLWASVGYMVETPYSYPELTV 85
            +  L   VGYMVE PY+YP  TV
Sbjct: 70 NGNPDLSKRVGYMVEVPYAYPNFTV 94


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 567,243,449
Number of extensions: 20706132
Number of successful extensions: 192817
Number of sequences better than 1.0e-05: 10182
Number of HSP's gapped: 194558
Number of HSP's successfully gapped: 10453
Length of query: 105
Length of database: 3,060,696,203
Length adjustment: 73
Effective length of query: 32
Effective length of database: 2,372,962,108
Effective search space: 75934787456
Effective search space used: 75934787456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)