BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0004.p
         (159 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1HU83.1 B1HU83_LYSSC Regulatory protein, MarR                        149   7e-35
A3I8N1.1 A3I8N1_9BACI Putative uncharacterized protein                149   8e-35
B1DA60.1 B1DA60_9BACL Transcriptional regulator, MarR family          135   1e-30
A8FG90.1 A8FG90_BACP2 Possible transcriptional regulator              125   2e-27
Q1GLM4.1 Q1GLM4_SILST Transcriptional regulator, MarR family           59   1e-07

>B1HU83.1 B1HU83_LYSSC Regulatory protein, MarR
          Length = 145

 Score =  149 bits (376), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 99/136 (72%)

Query: 21  LFQKFVAFTTAVHQITSDISKDIKPEALTPLQYKILEYIAVSQPVTLSEISDCMHMSMPN 80
           LF +FV FT +VHQ+T ++S+++    +TPLQYKILEYI VSQPVT +EIS+C HMS+PN
Sbjct: 6   LFHQFVTFTASVHQVTHELSQNVTVANITPLQYKILEYIKVSQPVTPTEISECQHMSLPN 65

Query: 81  TSRELKKLSEKQLCDKITDPADRRKQGITLSPAGEAMMNEAFQHIAIRFTERIGDLTEEQ 140
           TSREL+KL ++ L +K  D  DRRKQ I LS  G+ MM EAF  I  RF + I   ++E 
Sbjct: 66  TSRELRKLQDQNLIEKYNDTEDRRKQYIRLSIEGDKMMEEAFACIEERFLQLIQHASQED 125

Query: 141 RKEIERALDLLKEKVF 156
            K+I+ AL +L++KVF
Sbjct: 126 IKDIQLALTILEQKVF 141


>A3I8N1.1 A3I8N1_9BACI Putative uncharacterized protein
          Length = 148

 Score =  149 bits (376), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 97/136 (71%)

Query: 21  LFQKFVAFTTAVHQITSDISKDIKPEALTPLQYKILEYIAVSQPVTLSEISDCMHMSMPN 80
           LF +FV FT  VHQ+T ++++++    +TPLQYKILEYI VSQPVT +EIS+C HMS+PN
Sbjct: 9   LFHQFVTFTANVHQVTHELTQNVTVANITPLQYKILEYIKVSQPVTPTEISECQHMSLPN 68

Query: 81  TSRELKKLSEKQLCDKITDPADRRKQGITLSPAGEAMMNEAFQHIAIRFTERIGDLTEEQ 140
           TSREL+KL ++ L +K  D  DRRKQ I LS  GE MM  AF  I  RF + I   T+E 
Sbjct: 69  TSRELRKLQDQNLIEKWNDTEDRRKQYIRLSIEGEKMMEAAFACIEERFLQLIQHATQED 128

Query: 141 RKEIERALDLLKEKVF 156
            K+I+ AL +L++KVF
Sbjct: 129 IKDIQHALSILEQKVF 144


>B1DA60.1 B1DA60_9BACL Transcriptional regulator, MarR family
          Length = 146

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 93/136 (68%)

Query: 21  LFQKFVAFTTAVHQITSDISKDIKPEALTPLQYKILEYIAVSQPVTLSEISDCMHMSMPN 80
           LF++ V+   A HQ+  D++K +  + +TPLQY+I+E++ V QP+TLSEIS+C  +SMPN
Sbjct: 7   LFRQMVSHIAASHQLHYDMTKGMPMDEITPLQYEIMEFLTVKQPITLSEISECKGISMPN 66

Query: 81  TSRELKKLSEKQLCDKITDPADRRKQGITLSPAGEAMMNEAFQHIAIRFTERIGDLTEEQ 140
           TSRE++KL+EK LC+K+ DP DRRKQ I LSP GE  M  AF H+   F ++I  + E  
Sbjct: 67  TSREIRKLTEKGLCEKVEDPEDRRKQYIRLSPLGEEKMGMAFDHMRQLFLQQIEHVPEAD 126

Query: 141 RKEIERALDLLKEKVF 156
              I  AL++L   +F
Sbjct: 127 LARISEALEVLGTTIF 142


>A8FG90.1 A8FG90_BACP2 Possible transcriptional regulator
          Length = 148

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 86/136 (63%)

Query: 21  LFQKFVAFTTAVHQITSDISKDIKPEALTPLQYKILEYIAVSQPVTLSEISDCMHMSMPN 80
            F++FVAF +   ++   +   +KP  LT LQY ILE +AVS+P+T SEI+DC HMS+PN
Sbjct: 6   FFKEFVAFASTFSELKHALMNKVKPANLTTLQYLILEQLAVSEPLTPSEIADCQHMSLPN 65

Query: 81  TSRELKKLSEKQLCDKITDPADRRKQGITLSPAGEAMMNEAFQHIAIRFTERIGDLTEEQ 140
            SRELKKL EKQ  D+  D  D+RK  I LS  G A MNEAFQHI     + +     EQ
Sbjct: 66  VSRELKKLHEKQFIDREEDRDDKRKHVIKLSGKGRACMNEAFQHIEGMLLDSLSSSDIEQ 125

Query: 141 RKEIERALDLLKEKVF 156
             +I +AL LL + +F
Sbjct: 126 MDDIIQALRLLNQTIF 141


>Q1GLM4.1 Q1GLM4_SILST Transcriptional regulator, MarR family
          Length = 144

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 11/132 (8%)

Query: 26  VAFTTAVHQITSDISKDIKPEALTPLQYKILEYIAVSQPVTLSEISDCMHMSMPNTSREL 85
           +A   A  ++   + + +  + LT  Q+++L  +  S P+  ++I+D   + +P+ +R L
Sbjct: 14  IALLRARERVMGPVRQLLNGQDLTEQQWRVLRVVQESGPIDPTQIADQACLLLPSLTRIL 73

Query: 86  KKLSEKQLCDKITDPADRRKQGITLSPAG----EAMMNEAFQHIAIRFTERIGDLTEEQR 141
           +KL EK L D+  D  DRR+Q ITL+ AG    EA ++++   I  R  E++G       
Sbjct: 74  QKLQEKGLIDRARDETDRRRQVITLTDAGMQVIEANIDDSLALIE-RTREKMGA------ 126

Query: 142 KEIERALDLLKE 153
           ++ E  LDLL++
Sbjct: 127 EDYEALLDLLRK 138


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 814,635,662
Number of extensions: 28694110
Number of successful extensions: 105502
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 105750
Number of HSP's successfully gapped: 34
Length of query: 159
Length of database: 3,060,696,203
Length adjustment: 120
Effective length of query: 39
Effective length of database: 1,930,174,403
Effective search space: 75276801717
Effective search space used: 75276801717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)