BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0003.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HU84.1 B1HU84_LYSSC NAD(P)H dehydrogenase, quinone family EC=1... 287 3e-76 B1DA59.1 B1DA59_9BACL NAD(P)H dehydrogenase (Quinone) 285 1e-75 A3I8N0.1 A3I8N0_9BACI NAD(P)H dehydrogenase, quinone family protein 284 4e-75 B4AMG0.1 B4AMG0_BACPU Flavodoxin-like fold family protein 260 4e-68 A8FG89.1 A8FG89_BACP2 NAD(P)H dehydrogenase (Quinone) EC=1.6.5.2 259 6e-68 >B1HU84.1 B1HU84_LYSSC NAD(P)H dehydrogenase, quinone family EC=1.6.5.2 Length = 195 Score = 287 bits (734), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 162/191 (84%) Query: 1 MNTLVIYTHPNHQSLNYAFLQEVLRGSRENAKVNEIQVLDLYEEGFNPVLVFNEHKRRRD 60 M TL++YT+PNH+SLNYAFLQEV++G +EN ++EIQ+LDLY+E F+P L+F+EHKRRRD Sbjct: 1 MKTLIVYTYPNHKSLNYAFLQEVMKGCQENPAIDEIQLLDLYKEEFDPRLIFHEHKRRRD 60 Query: 61 MHSDPALAKYREQLLWADKIVLVYPIWWGRPPAMLMGYIDQMFASGFAYRDXXXXXXXXX 120 M+ DP L KYR+QL+WAD+IV VYPIWWGRPPAML+GY DQ+FAS FAYRD Sbjct: 61 MYRDPQLEKYRQQLIWADQIVFVYPIWWGRPPAMLLGYFDQLFASNFAYRDTKGLFPEGL 120 Query: 121 XXXXSVVCISTMQGPTHYPLLMLHNAHKVLMRKVLFNFVGIRKVKFFEFGSMESKRGKHA 180 SVVC+STM+GPT+YPLL L+NAHK+LM++ LF+FVG++KVKFFEFG+MESK+GKH Sbjct: 121 LKGKSVVCVSTMKGPTNYPLLWLNNAHKILMKRALFSFVGMKKVKFFEFGNMESKKGKHQ 180 Query: 181 QKLERIYRYFQ 191 QKL ++Y+YF+ Sbjct: 181 QKLNKVYQYFR 191 >B1DA59.1 B1DA59_9BACL NAD(P)H dehydrogenase (Quinone) Length = 195 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 131/193 (67%), Positives = 159/193 (82%) Query: 1 MNTLVIYTHPNHQSLNYAFLQEVLRGSRENAKVNEIQVLDLYEEGFNPVLVFNEHKRRRD 60 M TL+IYTHPNH SL+Y+FLQ+ ++G +EN +V EIQVLDLY E F+P+LVFNE+KRRRD Sbjct: 1 MKTLIIYTHPNHNSLSYSFLQKTIQGLQENTQVEEIQVLDLYAESFDPLLVFNENKRRRD 60 Query: 61 MHSDPALAKYREQLLWADKIVLVYPIWWGRPPAMLMGYIDQMFASGFAYRDXXXXXXXXX 120 MH+DP L K+R+QLLWA+KIV VYPIWWGRPPAML+GYID++FA+ FAYRD Sbjct: 61 MHADPELDKHRKQLLWAEKIVFVYPIWWGRPPAMLLGYIDRLFAANFAYRDNGKHLPGGL 120 Query: 121 XXXXSVVCISTMQGPTHYPLLMLHNAHKVLMRKVLFNFVGIRKVKFFEFGSMESKRGKHA 180 SVVCISTM+GP+ YPL L+NAHKVLMRK LF++VGI+KVKFFEFG ME K+GK Sbjct: 121 LKGKSVVCISTMKGPSLYPLFWLNNAHKVLMRKALFSYVGIKKVKFFEFGGMEKKQGKQE 180 Query: 181 QKLERIYRYFQTA 193 +KLERIYRYF+T Sbjct: 181 RKLERIYRYFKTV 193 >A3I8N0.1 A3I8N0_9BACI NAD(P)H dehydrogenase, quinone family protein Length = 195 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 160/191 (83%) Query: 1 MNTLVIYTHPNHQSLNYAFLQEVLRGSRENAKVNEIQVLDLYEEGFNPVLVFNEHKRRRD 60 M TL++YT+PNH+SLNYAFLQEV++G +EN ++EIQ+LDLYEE F+P L+F+EHKRRRD Sbjct: 1 MKTLIVYTYPNHKSLNYAFLQEVMKGCQENPAIDEIQLLDLYEEEFDPRLIFHEHKRRRD 60 Query: 61 MHSDPALAKYREQLLWADKIVLVYPIWWGRPPAMLMGYIDQMFASGFAYRDXXXXXXXXX 120 M+ DP L KYR+QL WAD+IV VYPIWWGRPPAML+GYIDQ+FAS FAYRD Sbjct: 61 MYRDPQLEKYRQQLTWADQIVFVYPIWWGRPPAMLLGYIDQLFASNFAYRDTKGLFPEGL 120 Query: 121 XXXXSVVCISTMQGPTHYPLLMLHNAHKVLMRKVLFNFVGIRKVKFFEFGSMESKRGKHA 180 SVVC+STM+GPT YPLL L+NAHK+LM++ LF+FVG++KVKFFEFG+MESK+G+ Sbjct: 121 LKGKSVVCVSTMKGPTKYPLLWLNNAHKILMKRALFSFVGMKKVKFFEFGNMESKKGQQQ 180 Query: 181 QKLERIYRYFQ 191 +KL ++Y+YF+ Sbjct: 181 RKLNKVYQYFR 191 >B4AMG0.1 B4AMG0_BACPU Flavodoxin-like fold family protein Length = 195 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 115/191 (60%), Positives = 150/191 (78%) Query: 1 MNTLVIYTHPNHQSLNYAFLQEVLRGSRENAKVNEIQVLDLYEEGFNPVLVFNEHKRRRD 60 MN L+IYTHP+H SLN AFL+E+++GS EN V+E++++DLY+E F+PVL+FN+ K+RRD Sbjct: 1 MNVLIIYTHPHHNSLNGAFLKEIMKGSEENPLVHEVKIIDLYKEEFDPVLIFNKEKKRRD 60 Query: 61 MHSDPALAKYREQLLWADKIVLVYPIWWGRPPAMLMGYIDQMFASGFAYRDXXXXXXXXX 120 MH DP + Y+E++ WADKIV VYPIWWGRPPAML+G+ID+MFA+ FAYR Sbjct: 61 MHKDPDIRMYQEKIKWADKIVFVYPIWWGRPPAMLLGFIDRMFAANFAYRQTGGLFPEGL 120 Query: 121 XXXXSVVCISTMQGPTHYPLLMLHNAHKVLMRKVLFNFVGIRKVKFFEFGSMESKRGKHA 180 S VC+STMQGPT+YPL L NAHK+LM++ L ++VGI+ VKFFEFG MES +GKH Sbjct: 121 LKGKSAVCVSTMQGPTNYPLFFLQNAHKILMKRALLHYVGIKPVKFFEFGMMESPKGKHE 180 Query: 181 QKLERIYRYFQ 191 KL+RIY YF+ Sbjct: 181 VKLKRIYNYFR 191 >A8FG89.1 A8FG89_BACP2 NAD(P)H dehydrogenase (Quinone) EC=1.6.5.2 Length = 195 Score = 259 bits (663), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 115/192 (59%), Positives = 149/192 (77%) Query: 1 MNTLVIYTHPNHQSLNYAFLQEVLRGSRENAKVNEIQVLDLYEEGFNPVLVFNEHKRRRD 60 MN L+IYTHP+H SLN AFL+E+++G+ EN V+E++++DLY+E F+PVLVFN+ K+RRD Sbjct: 1 MNVLIIYTHPHHNSLNGAFLKEIMKGTEENPLVHEVKIIDLYKEEFDPVLVFNQEKKRRD 60 Query: 61 MHSDPALAKYREQLLWADKIVLVYPIWWGRPPAMLMGYIDQMFASGFAYRDXXXXXXXXX 120 MH DP + Y+E++ WADKIV VYPIWWGRPPAML+G+ID+MFA+ FAYR Sbjct: 61 MHKDPDIRVYQEKIKWADKIVFVYPIWWGRPPAMLLGFIDRMFAANFAYRQTGGLLPEGL 120 Query: 121 XXXXSVVCISTMQGPTHYPLLMLHNAHKVLMRKVLFNFVGIRKVKFFEFGSMESKRGKHA 180 S VC+STMQGPT+YPL L NAHK+LM++ L +VGI+ VKFFEFG MES +GKH Sbjct: 121 LKGKSAVCVSTMQGPTNYPLFFLQNAHKMLMKRALLQYVGIKPVKFFEFGMMESPKGKHE 180 Query: 181 QKLERIYRYFQT 192 KL+RIY YF+ Sbjct: 181 VKLKRIYNYFRN 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,045,627,687 Number of extensions: 36030509 Number of successful extensions: 93193 Number of sequences better than 1.0e-05: 560 Number of HSP's gapped: 92573 Number of HSP's successfully gapped: 560 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)