BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0001.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5L340.1 Q5L340_GEOKA Hypothetical conserved protein 358 4e-97 Q65P10.1 Q65P10_BACLD Putative uncharacterized protein 355 4e-96 Q9KG10.1 Q9KG10_BACHD BH0305 protein 328 4e-88 C4KYL0.1 C4KYL0_EXISA NmrA family protein 310 8e-83 B1YHB1.1 B1YHB1_EXIS2 NmrA family protein 294 7e-78 >Q5L340.1 Q5L340_GEOKA Hypothetical conserved protein Length = 291 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 178/288 (61%), Positives = 214/288 (74%), Gaps = 4/288 (1%) Query: 10 MKIALTGATGHFGSIVAETLLKSVAAENLVVSVRNPEKADNLRTRGVDVRHGDFDQPETL 69 M I +TGATG G+ V ETLLKSV A L VSVR PEKA++LR RGVDVRHGDFD+PETL Sbjct: 1 MNILVTGATGKLGTKVVETLLKSVPAHQLAVSVRQPEKAEHLRARGVDVRHGDFDRPETL 60 Query: 70 DTAFAGVDRLLIVSADGDNDTRIRQHXXXXXXXXXXXXGFIVYTSVGHADSSSLFLAPVH 129 +TAF G+DRLLI+S DGDN+TRIRQH GFI YTS+ +A+ S L LA VH Sbjct: 61 ETAFQGIDRLLIISTDGDNETRIRQHTNAVNAAQRAQVGFIAYTSLANANESRLALAEVH 120 Query: 130 RATEEFIRESGIPYSFLRNNWYLENEVGSIQAVQAGAPWVTSAGDGKVGWATRRDYXXXX 189 R TEE I +GIPYSFLRNNWYLENE+G++QAV AGAPWVTSAG GKVGWA R+DY Sbjct: 121 RVTEEAIANTGIPYSFLRNNWYLENEIGTVQAVLAGAPWVTSAGTGKVGWALRQDYAEAA 180 Query: 190 XXXXXXXXHKNTVYELSGTPATQAELAAVVGKLLGKEVPVQQVDDAVYANIMAKAGVPEA 249 H+NT+YELSG TQ ELAA +G +LGK+VPVQQV+DA YA+IM KAG+P+ Sbjct: 181 AAVLAGDGHENTIYELSGPLMTQEELAAALGAVLGKDVPVQQVNDAAYADIMKKAGLPDP 240 Query: 250 ALPIVVAIQQAIREGALDIASSDFTKLLQRPLTP----LSEGVKDLLG 293 + +V IQ+ IREG+L+I S+DF KLL RP+TP L++ V+DL G Sbjct: 241 LVSFLVDIQRGIREGSLEIESNDFEKLLGRPVTPIHDALAQLVRDLKG 288 >Q65P10.1 Q65P10_BACLD Putative uncharacterized protein Length = 290 Score = 355 bits (910), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 170/283 (60%), Positives = 210/283 (74%) Query: 10 MKIALTGATGHFGSIVAETLLKSVAAENLVVSVRNPEKADNLRTRGVDVRHGDFDQPETL 69 MK+ +TGATG GS + E LL++V A+ L VSVRNPEKA+ LR RGVDVRHGDFD+PETL Sbjct: 1 MKMLVTGATGKLGSKIVEKLLETVPADQLAVSVRNPEKAEALRARGVDVRHGDFDRPETL 60 Query: 70 DTAFAGVDRLLIVSADGDNDTRIRQHXXXXXXXXXXXXGFIVYTSVGHADSSSLFLAPVH 129 ++AF G+DRLLI+SADGDN+TRIRQH FI YTS+ +A S FLAP H Sbjct: 61 ESAFRGIDRLLIISADGDNETRIRQHGNAVAAAERAGVRFIAYTSIANARESKNFLAPTH 120 Query: 130 RATEEFIRESGIPYSFLRNNWYLENEVGSIQAVQAGAPWVTSAGDGKVGWATRRDYXXXX 189 +ATEE I ++GIPYSFLRNNWYLENE+ SIQ V AGAPWVTSA +GKVGWA ++DY Sbjct: 121 KATEEAILQTGIPYSFLRNNWYLENEMSSIQGVLAGAPWVTSAENGKVGWALQQDYADAA 180 Query: 190 XXXXXXXXHKNTVYELSGTPATQAELAAVVGKLLGKEVPVQQVDDAVYANIMAKAGVPEA 249 H+NTVYELSG TQ E+A+ +G++LGKEVPVQ VDDA Y +IM AGVP+ Sbjct: 181 AAVLSGEGHENTVYELSGKLLTQEEIASALGEVLGKEVPVQHVDDAAYRDIMKNAGVPDF 240 Query: 250 ALPIVVAIQQAIREGALDIASSDFTKLLQRPLTPLSEGVKDLL 292 +P+VV IQ+ IREG L++ S DF K+L RPLTP+ EG+ ++ Sbjct: 241 LIPMVVDIQKGIREGTLEVESDDFEKVLGRPLTPIKEGLAQIV 283 >Q9KG10.1 Q9KG10_BACHD BH0305 protein Length = 284 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 163/284 (57%), Positives = 202/284 (71%), Gaps = 4/284 (1%) Query: 10 MKIALTGATGHFGSIVAETLLKSVAAENLVVSVRNPEKADNLRTRGVDVRHGDFDQPETL 69 MK+ +TGATG GS+V E LLK+V AEN+ VSVR+P+KA++L+ +GVDVR GDF QPE+L Sbjct: 1 MKLLVTGATGQLGSLVVEALLKTVPAENVAVSVRDPKKAEHLKAQGVDVRQGDFTQPESL 60 Query: 70 DTAFAGVDRLLIVS-ADGDNDTRIRQHXXXXXXXXXXXXGFIVYTSVGHADSSSLFLAPV 128 +AFAGVD++LI+S A GD R+ QH FI YTS+ +A + F+A Sbjct: 61 VSAFAGVDKILIISSAPGD---RVAQHKAAIQAAKENNVRFIAYTSIANAQDNPFFIAED 117 Query: 129 HRATEEFIRESGIPYSFLRNNWYLENEVGSIQAVQAGAPWVTSAGDGKVGWATRRDYXXX 188 HR TE+ I ESGIPYSFLRNNWYLENEVG+IQAV +GAPW+TSAG GKVGWA RRDY Sbjct: 118 HRETEKAIVESGIPYSFLRNNWYLENEVGTIQAVASGAPWLTSAGSGKVGWAPRRDYADA 177 Query: 189 XXXXXXXXXHKNTVYELSGTPATQAELAAVVGKLLGKEVPVQQVDDAVYANIMAKAGVPE 248 H++T YELSG P TQ ELA VV LG++V VQQVDDA Y M+ AG+PE Sbjct: 178 AAAVLTGEGHEHTTYELSGHPLTQEELAQVVSDALGRDVEVQQVDDATYEQAMSGAGIPE 237 Query: 249 AALPIVVAIQQAIREGALDIASSDFTKLLQRPLTPLSEGVKDLL 292 LP +V IQQ IREG L++ S DF K+L RPLTPL + V+++L Sbjct: 238 EVLPFIVGIQQGIREGYLNVVSGDFEKVLGRPLTPLKDAVREIL 281 >C4KYL0.1 C4KYL0_EXISA NmrA family protein Length = 285 Score = 310 bits (795), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 154/283 (54%), Positives = 191/283 (67%) Query: 10 MKIALTGATGHFGSIVAETLLKSVAAENLVVSVRNPEKADNLRTRGVDVRHGDFDQPETL 69 MK +TGATG GS + E LLKS+ A L VSVRNPEKA +L+ RGVDVRHGDFDQP+TL Sbjct: 1 MKYLVTGATGKLGSKIVEELLKSIDASELAVSVRNPEKAASLKERGVDVRHGDFDQPDTL 60 Query: 70 DTAFAGVDRLLIVSADGDNDTRIRQHXXXXXXXXXXXXGFIVYTSVGHADSSSLFLAPVH 129 D AF GV+RLLI+SADGDNDTRIRQH FI YTS+ A S +AP H Sbjct: 61 DEAFKGVERLLIISADGDNDTRIRQHTNAVEAAKRADVSFIAYTSLADATDSENLMAPPH 120 Query: 130 RATEEFIRESGIPYSFLRNNWYLENEVGSIQAVQAGAPWVTSAGDGKVGWATRRDYXXXX 189 TEE I ESGIP++FLRNNWYLENE+ SIQAV GAPW+T+A DGKVGWA ++DY Sbjct: 121 VVTEEAIVESGIPHAFLRNNWYLENELPSIQAVIDGAPWITAARDGKVGWALQQDYAEAA 180 Query: 190 XXXXXXXXHKNTVYELSGTPATQAELAAVVGKLLGKEVPVQQVDDAVYANIMAKAGVPEA 249 + VYELSG TQ +L + ++LG+EV +Q++ Y M AG+PE Sbjct: 181 SNVLLKEQQDHAVYELSGPLHTQQDLVDALSEVLGREVMMQELSLEAYEETMRGAGLPEE 240 Query: 250 ALPIVVAIQQAIREGALDIASSDFTKLLQRPLTPLSEGVKDLL 292 + I+ IQ++IR+G L+I SDF +L RP+TPL EG++ LL Sbjct: 241 VVAILAGIQRSIRQGTLEIHESDFEPVLGRPVTPLQEGIRQLL 283 >B1YHB1.1 B1YHB1_EXIS2 NmrA family protein Length = 285 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 141/283 (49%), Positives = 190/283 (67%) Query: 10 MKIALTGATGHFGSIVAETLLKSVAAENLVVSVRNPEKADNLRTRGVDVRHGDFDQPETL 69 MK+ +TGATG G+ + E LL + AEN++VSVR+P+KA+ L +RG++VRHGDFD+P+TL Sbjct: 1 MKLLVTGATGKLGTKIVEHLLTKIEAENVIVSVRDPKKANELASRGIEVRHGDFDEPDTL 60 Query: 70 DTAFAGVDRLLIVSADGDNDTRIRQHXXXXXXXXXXXXGFIVYTSVGHADSSSLFLAPVH 129 AFAGVDRLLI+S DG+ TRIRQH G I YTS+ +A++S FLA H Sbjct: 61 QQAFAGVDRLLIISTDGEEATRIRQHTAAVEAAKAAGVGLIAYTSIANAEASQNFLARTH 120 Query: 130 RATEEFIRESGIPYSFLRNNWYLENEVGSIQAVQAGAPWVTSAGDGKVGWATRRDYXXXX 189 + TE+ IRE+GIP+ F RNNWYLENE +I AV+AG W+TSAG+G VGWA + DY Sbjct: 121 QVTEQLIRETGIPFLFFRNNWYLENEQSTIDAVRAGQDWLTSAGNGTVGWALQEDYAEAI 180 Query: 190 XXXXXXXXHKNTVYELSGTPATQAELAAVVGKLLGKEVPVQQVDDAVYANIMAKAGVPEA 249 ++YELSG TQ ++A +G++LG+ V V+QVD A Y IM +AGVPE Sbjct: 181 ATVLVDPKPTKSIYELSGPLHTQQDIAEALGQVLGRPVQVKQVDSATYTAIMQQAGVPEF 240 Query: 250 ALPIVVAIQQAIREGALDIASSDFTKLLQRPLTPLSEGVKDLL 292 LP++ AIQ+ I G L + S DF +L RP L +G++ L+ Sbjct: 241 LLPMLQAIQEGIAAGTLAVESQDFEHILDRPPVSLEDGLRQLV 283 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,541,117,529 Number of extensions: 57396318 Number of successful extensions: 163040 Number of sequences better than 1.0e-05: 535 Number of HSP's gapped: 162302 Number of HSP's successfully gapped: 535 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)