BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0002.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KYH3.1 Q5KYH3_GEOKA Glutamine ABC transporter (Permease) 298 3e-79 C3J4C9.1 C3J4C9_9BACI Polar amino acid ABC transporter, inner me... 298 3e-79 B7YEI6.1 B7YEI6_9BACI Polar amino acid ABC transporter, inner me... 298 3e-79 B1DI86.1 B1DI86_9BACL Polar amino acid ABC transporter, inner me... 296 1e-78 O34671.1 GLNM_BACSU Probable glutamine ABC transporter permease ... 295 3e-78 >Q5KYH3.1 Q5KYH3_GEOKA Glutamine ABC transporter (Permease) Length = 217 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 179/214 (83%) Query: 65 MEFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFI 124 + +SIL +H+ Y++GF T+ +SVLALIGS +GT+IA+FRI P++PL W GT YVEFI Sbjct: 2 LRYSILVEHWDLYMQGFGHTIKASVLALIGSLALGTIIAIFRIAPIRPLNWVGTAYVEFI 61 Query: 125 RNIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 RNIPL+L+V+VFF G A+G D F AGT+GL VYT+AFIAEAIR+GI AVPKGQMEAA Sbjct: 62 RNIPLVLIVFVFFMGLPAVGIRFDSFTAGTLGLMVYTAAFIAEAIRSGIQAVPKGQMEAA 121 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 RSSGL+Y+Q M +VILPQA+K+VIPPLGNQFINL+KNSSVL ++AGLDLMY+ D IS++T Sbjct: 122 RSSGLTYLQAMRYVILPQAVKIVIPPLGNQFINLVKNSSVLGVIAGLDLMYYGDLISSKT 181 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHR 278 + TFD YIFVALFYLVLT+PLS GV ERRL + Sbjct: 182 FVTFDVYIFVALFYLVLTIPLSLGVGYLERRLLK 215 >C3J4C9.1 C3J4C9_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 217 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 179/214 (83%) Query: 65 MEFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFI 124 + +SIL +H+ Y++GF T+ +SVLALIGS +GT+IA+FRI P++PL W GT YVEFI Sbjct: 2 LRYSILVEHWDLYMQGFGHTIKASVLALIGSLALGTIIAIFRIAPIRPLNWVGTAYVEFI 61 Query: 125 RNIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 RNIPL+L+V+VFF G A+G D F AGT+GL VYT+AFIAEAIR+GI AVPKGQMEAA Sbjct: 62 RNIPLVLIVFVFFMGLPAVGIRFDSFTAGTLGLMVYTAAFIAEAIRSGIQAVPKGQMEAA 121 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 RSSGL+Y+Q M +VILPQA+K+VIPPLGNQFINL+KNSSVL ++AGLDLMY+ D IS++T Sbjct: 122 RSSGLTYLQAMRYVILPQAVKIVIPPLGNQFINLVKNSSVLGVIAGLDLMYYGDLISSKT 181 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHR 278 + TFD YIFVALFYLVLT+PLS GV ERRL + Sbjct: 182 FVTFDVYIFVALFYLVLTIPLSLGVGYLERRLLK 215 >B7YEI6.1 B7YEI6_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 217 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 179/214 (83%) Query: 65 MEFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFI 124 + +SIL +H+ Y++GF T+ +SVLALIGS +GT+IA+FRI P++PL W GT YVEFI Sbjct: 2 LRYSILVEHWDLYMQGFGHTIKASVLALIGSLALGTIIAIFRIAPIRPLNWVGTAYVEFI 61 Query: 125 RNIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 RNIPL+L+V+VFF G A+G D F AGT+GL VYT+AFIAEAIR+GI AVPKGQMEAA Sbjct: 62 RNIPLVLIVFVFFMGLPAVGIRFDSFTAGTLGLMVYTAAFIAEAIRSGIQAVPKGQMEAA 121 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 RSSGL+Y+Q M +VILPQA+K+VIPPLGNQFINL+KNSSVL ++AGLDLMY+ D IS++T Sbjct: 122 RSSGLTYLQAMRYVILPQAVKIVIPPLGNQFINLVKNSSVLGVIAGLDLMYYGDLISSKT 181 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHR 278 + TFD YIFVALFYLVLT+PLS GV ERRL + Sbjct: 182 FVTFDVYIFVALFYLVLTIPLSLGVGYLERRLLK 215 >B1DI86.1 B1DI86_9BACL Polar amino acid ABC transporter, inner membrane subunit Length = 217 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/214 (65%), Positives = 177/214 (82%) Query: 66 EFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFIR 125 + SI TD+F Y++GF T+ SSV+AL+GSF +GT+IAVFRI+ VKPLRW GT YVEF+R Sbjct: 3 DISIFTDNFEIYMKGFVNTIWSSVVALLGSFALGTIIAVFRISSVKPLRWIGTAYVEFVR 62 Query: 126 NIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAAR 185 NIPLLLVV+VF+YG +LG TL GF GT+GLTVYT++F+AEAIRAGI+++P GQ EAAR Sbjct: 63 NIPLLLVVFVFYYGLPSLGVTLSGFICGTVGLTVYTASFVAEAIRAGIMSIPTGQTEAAR 122 Query: 186 SSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTETY 245 +SGL+Y QTM HV+LPQA+K+VIPPL NQFINL+KNSS+L + AG DLMY+ D ++++TY Sbjct: 123 ASGLTYTQTMRHVVLPQAVKIVIPPLSNQFINLVKNSSILGVFAGFDLMYYGDQVASKTY 182 Query: 246 RTFDTYIFVALFYLVLTLPLSYGVRVWERRLHRK 279 TFDTYIFVA YLVLT+PLS+ ERRL + Sbjct: 183 ATFDTYIFVAALYLVLTIPLSFAALKLERRLAKN 216 >O34671.1 GLNM_BACSU Probable glutamine ABC transporter permease protein glnM Length = 216 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 173/216 (80%) Query: 65 MEFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFI 124 M SIL D+F Y++GF T+L+SV+AL GSF++G +AV RIT KPL+W GT YVEFI Sbjct: 1 MNVSILFDNFSMYMDGFYHTLLASVIALAGSFVLGVAVAVMRITVFKPLQWLGTAYVEFI 60 Query: 125 RNIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 RNIPLLL+ +VF++G G LDGF+AGT+ LT+YTSAFIAEAIRAGI +V KGQMEAA Sbjct: 61 RNIPLLLITFVFYFGLPNAGLRLDGFQAGTVALTIYTSAFIAEAIRAGIQSVSKGQMEAA 120 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 RSSG +Y Q M H+ILPQAIK+VIPPLGNQF+NL+KNSS+L +VAGLDLMY AD +S+ T Sbjct: 121 RSSGFTYSQAMLHIILPQAIKIVIPPLGNQFLNLVKNSSILGVVAGLDLMYQADLVSSST 180 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHRKY 280 FD YIFVALFYLVLT+PLS GV E+RL + Y Sbjct: 181 LVVFDVYIFVALFYLVLTIPLSIGVNYLEKRLEKSY 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.146 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,492,471,144 Number of extensions: 58501871 Number of successful extensions: 219863 Number of sequences better than 1.0e-05: 7850 Number of HSP's gapped: 214688 Number of HSP's successfully gapped: 7861 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)