BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0001.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DI87.1 B1DI87_9BACL Extracellular solute-binding protein family 3 375 e-102 C2W434.1 C2W434_BACCE Putative uncharacterized protein 356 2e-96 A7GL82.1 A7GL82_BACCN Extracellular solute-binding protein family 3 352 2e-95 C3BFY3.1 C3BFY3_9BACI Putative uncharacterized protein 351 5e-95 C3AZE8.1 C3AZE8_BACMY Putative uncharacterized protein 348 2e-94 >B1DI87.1 B1DI87_9BACL Extracellular solute-binding protein family 3 Length = 282 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/280 (67%), Positives = 218/280 (77%), Gaps = 4/280 (1%) Query: 5 KSFKCLSV-LMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSKAIAKIKDRGKLLVGV 63 KS+ L + L A ++AGC + A+ IK+RGKL+VGV Sbjct: 4 KSWMTLGIALTFLATALLAGCSSKEGGDGNGANGESASGSAS---ALESIKNRGKLVVGV 60 Query: 64 KYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLNNGEIDM 123 KYDT+LFGLKDPASG VEGFD+DI+KA+AK ILGDE IELKEVTSKTRIPMLNN +IDM Sbjct: 61 KYDTKLFGLKDPASGSVEGFDVDIAKALAKEILGDETKIELKEVTSKTRIPMLNNNDIDM 120 Query: 124 VVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGATSIKNI 183 +VATMTITEERKKEVDFSDVYF+AGQSLLVKKGSPI I+D+ K TK+L KG+TS+ NI Sbjct: 121 IVATMTITEERKKEVDFSDVYFKAGQSLLVKKGSPIKSIDDIKKGTKVLAVKGSTSVDNI 180 Query: 184 KEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPFTDEPYG 243 K K P T+LEFDNYQDAFSALKAGQGD LTTD+AILYGMA QDP YEVVG+PFTDEPYG Sbjct: 181 KAKAPDATILEFDNYQDAFSALKAGQGDTLTTDNAILYGMAVQDPNYEVVGEPFTDEPYG 240 Query: 244 IAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPA 283 IA++KG TD++ +VN L +L NGEYD IY KWIGKAP+ Sbjct: 241 IAIKKGATDLLNSVNAGLKKLHDNGEYDKIYEKWIGKAPS 280 >C2W434.1 C2W434_BACCE Putative uncharacterized protein Length = 276 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 180/287 (62%), Positives = 218/287 (75%), Gaps = 15/287 (5%) Query: 1 MKMSKSFKCLSVLMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSK---AIAKIKDRG 57 ++M K F + V LV+AGC T++K + +IK RG Sbjct: 2 IRMKKLFTFI-VFACLFTLVVAGCGNKKEEAKE-----------TNTKQGGVVEQIKKRG 49 Query: 58 KLLVGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLN 117 KL+VGVK+DT LFGLK+P++GKVEGFD+DI+KA+AK ILGDE+ +ELKEVTSKTRIPML Sbjct: 50 KLVVGVKHDTNLFGLKNPSTGKVEGFDVDIAKALAKKILGDESKLELKEVTSKTRIPMLK 109 Query: 118 NGEIDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGA 177 NG+ID ++ATMTITEERKKEVDFSDVYF+AGQSLLVKKGS I I+DV KD K+L KG+ Sbjct: 110 NGDIDTIIATMTITEERKKEVDFSDVYFKAGQSLLVKKGSNIKSIDDVKKDVKVLAVKGS 169 Query: 178 TSIKNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPF 237 TS NI++K P TVLEF+NY +AF+ALKAG+GD LTTD+AILYGMA QD Y+VVGK F Sbjct: 170 TSTNNIRQKSPEATVLEFENYSEAFTALKAGKGDVLTTDNAILYGMAKQDANYQVVGKIF 229 Query: 238 TDEPYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPAK 284 TDEPYGIAVQKG TD+ K +ND L E+KANGEYD +Y KWIG+ P K Sbjct: 230 TDEPYGIAVQKGATDLTKEINDLLKEMKANGEYDKLYEKWIGEKPEK 276 >A7GL82.1 A7GL82_BACCN Extracellular solute-binding protein family 3 Length = 275 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 175/284 (61%), Positives = 212/284 (74%), Gaps = 9/284 (3%) Query: 1 MKMSKSFKCLSVLMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSKAIAKIKDRGKLL 60 MK K + L V + L++AGC T + +IK RGKL+ Sbjct: 1 MKRMKKWFTLIVFVCLFTLIVAGCGNKQEEAKETS---------TSGGVVEQIKKRGKLV 51 Query: 61 VGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLNNGE 120 VGVK DT LFGLK+P++G+VEGFD+D++KA+AK ILGDE +ELKEVTSKTRIPML NG+ Sbjct: 52 VGVKNDTNLFGLKNPSTGQVEGFDVDMAKALAKRILGDEKKLELKEVTSKTRIPMLKNGD 111 Query: 121 IDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGATSI 180 ID ++ATMTITEERKKEVDFSDVYF+AGQSLLVKKGS I I+DV K K+L KG+TS Sbjct: 112 IDAIIATMTITEERKKEVDFSDVYFKAGQSLLVKKGSDIKSIDDVKKGVKVLAVKGSTST 171 Query: 181 KNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPFTDE 240 +N+++K P TVLEF+NY +AF+ALKAGQGD LTTD+AILYGMA QD YEVVGK FT+E Sbjct: 172 QNVRQKAPEATVLEFENYSEAFTALKAGQGDVLTTDNAILYGMAKQDANYEVVGKIFTNE 231 Query: 241 PYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPAK 284 PYGIAVQKG TD+ K +ND L E+K NGEYD +Y KWIG+ P K Sbjct: 232 PYGIAVQKGATDLTKEINDLLKEIKENGEYDKLYEKWIGEKPEK 275 >C3BFY3.1 C3BFY3_9BACI Putative uncharacterized protein Length = 276 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 178/284 (62%), Positives = 210/284 (73%), Gaps = 9/284 (3%) Query: 1 MKMSKSFKCLSVLMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSKAIAKIKDRGKLL 60 KM K F L V L++AGC + K + +IK RGKL+ Sbjct: 2 FKMKKLF-VLIVFSCLFTLIVAGCGKETSKEVSKET--------SGGKVVDQIKKRGKLV 52 Query: 61 VGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLNNGE 120 VGVK DT LFGLKDPA+GKVEGFD+DI+KA+AK ILGDE+ +E KEVTSKTRIPML NG+ Sbjct: 53 VGVKNDTNLFGLKDPATGKVEGFDVDIAKALAKKILGDESKVEFKEVTSKTRIPMLKNGD 112 Query: 121 IDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGATSI 180 ID ++ATMTITEERKKEVDFSDVYF+AGQSLLVKKGS I I+DV +L KG+TS Sbjct: 113 IDTIIATMTITEERKKEVDFSDVYFKAGQSLLVKKGSKIKSIDDVKSGVTVLAVKGSTST 172 Query: 181 KNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPFTDE 240 +NI+EK P VLEF+NY +AF+ALKAG+GD LTTD+AILYGMA QD Y+VVGK FTDE Sbjct: 173 QNIREKSPEAKVLEFENYSEAFTALKAGKGDVLTTDNAILYGMAKQDANYQVVGKIFTDE 232 Query: 241 PYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPAK 284 PYGIAVQKG TD+ K +ND L E+KANGEYD +Y KWIG+ P K Sbjct: 233 PYGIAVQKGATDLTKVINDLLKEMKANGEYDKLYEKWIGEKPEK 276 >C3AZE8.1 C3AZE8_BACMY Putative uncharacterized protein Length = 276 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 177/284 (62%), Positives = 210/284 (73%), Gaps = 9/284 (3%) Query: 1 MKMSKSFKCLSVLMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSKAIAKIKDRGKLL 60 KM K F L V L++AGC + K + +IK RGKL+ Sbjct: 2 FKMKKLF-VLIVFSCLFTLIVAGCGKETSKEVSKET--------SGGKVVDQIKKRGKLV 52 Query: 61 VGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLNNGE 120 VGVK DT LFGLKDPA+GKVEGFD+DI+KA+AK ILGDE+ +E KEVTSKTRIPML NG+ Sbjct: 53 VGVKNDTNLFGLKDPATGKVEGFDVDIAKALAKKILGDESKVEFKEVTSKTRIPMLKNGD 112 Query: 121 IDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGATSI 180 ID ++ATMTITEERKKEVDFSDVYF+AGQSLLVKKGS I I+DV +L KG+TS Sbjct: 113 IDTIIATMTITEERKKEVDFSDVYFKAGQSLLVKKGSKIKSIDDVKSGVTVLAVKGSTST 172 Query: 181 KNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPFTDE 240 +NI++K P VLEF+NY +AF+ALKAG+GD LTTD+AILYGMA QD Y+VVGK FTDE Sbjct: 173 QNIRKKSPEAKVLEFENYSEAFTALKAGKGDVLTTDNAILYGMAKQDANYQVVGKIFTDE 232 Query: 241 PYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPAK 284 PYGIAVQKG TD+ K +ND L E+KANGEYD +Y KWIG+ P K Sbjct: 233 PYGIAVQKGATDLTKVINDLLKEMKANGEYDKLYEKWIGEKPEK 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,507,589,221 Number of extensions: 61056918 Number of successful extensions: 160140 Number of sequences better than 1.0e-05: 5955 Number of HSP's gapped: 150788 Number of HSP's successfully gapped: 6038 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)