BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0027.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65KE5.1 Q65KE5_BACLD Putative uncharacterized protein                 56   1e-06
Q65CR4.1 Q65CR4_BACLD Putative uncharacterized protein                 53   9e-06

>Q65KE5.1 Q65KE5_BACLD Putative uncharacterized protein
          Length = 85

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 10 LDNVLAFASVLAVFTLALVQLIKNNINLPRNAVPFXXXXXXXXXXXXXYPFTDLGLTLRX 69
          ++ VL FA+VLA    ALVQL+K  IN+P N VP              YPFTDL L LR 
Sbjct: 1  MEEVLLFATVLAPILTALVQLVKKTINMPTNVVPAVSFVLGIALGAVAYPFTDLELVLRL 60

Query: 70 XXXXXXXXXXXXXFELAFNDRPGTTQ 95
                       FE+    R GTT+
Sbjct: 61 WAGGFAGLAATGLFEIG-AKREGTTK 85


>Q65CR4.1 Q65CR4_BACLD Putative uncharacterized protein
          Length = 88

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%)

Query: 10 LDNVLAFASVLAVFTLALVQLIKNNINLPRNAVPFXXXXXXXXXXXXXYPFTDLGLTLRX 69
          ++ VL FASVL+   LALV+L+K  + +P+N +P              YPFTDL L LR 
Sbjct: 1  METVLIFASVLSPIILALVELVKKTVKMPKNLIPLVSLLIGLLIGAAAYPFTDLELVLRL 60

Query: 70 XXXXXXXXXXXXXFELAFN 88
                       FE+  N
Sbjct: 61 WSGGLAGLTATGLFEIGKN 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.144    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 339,996,018
Number of extensions: 7132527
Number of successful extensions: 14762
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14761
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)