BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0018.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D680.1 B1D680_9BACL Tail fiber repeat 2 protein                     123   5e-27
B5K3A5.1 B5K3A5_9RHOB Bacteriophage tail fiber protein                 73   7e-12
A3XEN5.1 A3XEN5_9RHOB Prophage MuMc02, head decoration protein, ...    72   1e-11
A3X5N6.1 A3X5N6_9RHOB Prophage MuMc02, head decoration protein, ...    68   3e-10
A6FMA3.1 A6FMA3_9RHOB Prophage MuMc02, head decoration protein, ...    62   2e-08

>B1D680.1 B1D680_9BACL Tail fiber repeat 2 protein
          Length = 138

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 82/138 (59%), Gaps = 27/138 (19%)

Query: 1   MALKTLIQIRRGQESALGTLAVGELGFCTDTGKLYIGTGTVNKLLVASQSTGDMLKSIYD 60
           MA K LIQIRRG E  +G LA GELG+CTD+ KLYIGT   N +LVA+Q+ GDMLKSIYD
Sbjct: 1   MARKALIQIRRGLEINIGLLAEGELGYCTDSQKLYIGTSGGNVVLVAAQTAGDMLKSIYD 60

Query: 61  TNNNGKVDYAQAADTVPWSGVDGKPAVYPPAAHTHEY----------------------- 97
           T+N+GKVD A AAD VPWSG+  KPA    AA   +                        
Sbjct: 61  TDNDGKVDTAVAADNVPWSGISNKPAASVNAAGIVQLNSTVTSTSMVQAATASAVKSAYD 120

Query: 98  MPKGPLS----WNQLKGV 111
           +  G LS    WNQLKGV
Sbjct: 121 LASGKLSPRVTWNQLKGV 138


>B5K3A5.1 B5K3A5_9RHOB Bacteriophage tail fiber protein
          Length = 341

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query: 52  GDMLKSIYDTNNNGKVDYAQAADTVPWSGVDGKPAVYPPAAHTH 95
           GDMLKS YD +N+GKVD A  AD+VPW+GV GKP+ YPPA H+H
Sbjct: 159 GDMLKSAYDADNDGKVDAADMADSVPWAGVTGKPSTYPPATHSH 202


>A3XEN5.1 A3XEN5_9RHOB Prophage MuMc02, head decoration protein, putative
          Length = 419

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 39/50 (78%)

Query: 46  VASQSTGDMLKSIYDTNNNGKVDYAQAADTVPWSGVDGKPAVYPPAAHTH 95
           +AS   GDMLK+ YD++N+GKVD A+ AD V W+GV GKPA +PP+AH H
Sbjct: 231 IASFGAGDMLKATYDSDNDGKVDAAELADAVAWTGVTGKPATFPPSAHNH 280


>A3X5N6.1 A3X5N6_9RHOB Prophage MuMc02, head decoration protein, putative
          Length = 371

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 52  GDMLKSIYDTNNNGKVDYAQAADTVPWSGVDGKPAVYPPAAHTH 95
           GDMLK+ YD+N +GKVD A+AAD+VPW+G+ GKP+ + P+ H+H
Sbjct: 189 GDMLKATYDSNADGKVDAAEAADSVPWAGITGKPSSFTPSTHSH 232


>A6FMA3.1 A6FMA3_9RHOB Prophage MuMc02, head decoration protein, putative
          Length = 419

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 46  VASQSTGDMLKSIYDTNNNGKVDYAQAADTVPWSGVDGKPAVYPPAAHTH 95
           +A  +TGDM  + YD++ +GKVD A+ AD VPWSGV GKP+ + P AH H
Sbjct: 231 IAGLNTGDMHVATYDSDADGKVDAAELADAVPWSGVTGKPSSFAPEAHGH 280


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 714,072,934
Number of extensions: 27671542
Number of successful extensions: 49038
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 49039
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)