BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0013.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEC7.1 B3KEC7_9BACI Phage protein                                    91   5e-17
C3KWP2.1 C3KWP2_CLOB6 Putative uncharacterized protein                 66   9e-10
A5I2L0.1 A5I2L0_CLOBH Putative phage protein                           65   1e-09
Q24QF2.1 Q24QF2_DESHY Putative uncharacterized protein                 65   2e-09
B8FNV0.1 B8FNV0_DESHD Phage protein                                    65   2e-09

>B3KEC7.1 B3KEC7_9BACI Phage protein
          Length = 98

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 57/79 (72%)

Query: 1  VAFSYGTVTVAAPLQIQVDQRFILSGAALVLPESVMESKLEWDGREIVLRRGLEKGDRVL 60
          +A  YGTVT   PL++ VDQRF L+   LV+ ES+ E KL   G E V+R+GLE GD VL
Sbjct: 19 MAVLYGTVTSIYPLEVNVDQRFSLTEDFLVIGESMTEYKLNIGGAEYVIRKGLETGDTVL 78

Query: 61 MVRMQGGQSYVVLDRLVDP 79
          ++R QGGQ+Y+VLDRLV P
Sbjct: 79 LIRYQGGQTYLVLDRLVKP 97


>C3KWP2.1 C3KWP2_CLOB6 Putative uncharacterized protein
          Length = 114

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 17/94 (18%)

Query: 1   VAFSYGTVTVAAPLQIQVDQRFILSGAALVLPESV-----------------MESKLEWD 43
           V  S+G V  A  L+I+VDQ+ IL     ++PES+                 +ES L   
Sbjct: 21  VNISFGEVVSAENLKIKVDQKLILDEDFFIVPESLTRYEIDLRHTHAYINNSIESNLNTS 80

Query: 44  GREIVLRRGLEKGDRVLMVRMQGGQSYVVLDRLV 77
             ++++R GL++GD+VL++R+QGGQ YV+LD++V
Sbjct: 81  LDKLLIREGLKQGDKVLLLRVQGGQQYVILDKVV 114


>A5I2L0.1 A5I2L0_CLOBH Putative phage protein
          Length = 116

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 17/94 (18%)

Query: 1   VAFSYGTVTVAAPLQIQVDQRFILSGAALVLPESV-----------------MESKLEWD 43
           V  S+G V     L+I+VDQ+ IL     ++PES+                 +ES L   
Sbjct: 21  VNISFGEVVSTNELKIKVDQKLILDKDFFIIPESLTRYEVDLKHTHTYINNSIESNLNTS 80

Query: 44  GREIVLRRGLEKGDRVLMVRMQGGQSYVVLDRLV 77
             ++++R GL++GD+VL++R+QGGQ YV+LD++V
Sbjct: 81  LDKLLIREGLKQGDKVLLLRVQGGQQYVILDKVV 114


>Q24QF2.1 Q24QF2_DESHY Putative uncharacterized protein
          Length = 119

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 18/91 (19%)

Query: 5   YGTVTVAAPLQIQVDQRFILSGAALVLPESVMESKLEW--------DG----------RE 46
           +G +    PL ++VDQRFIL    L++PE + + +++         DG          + 
Sbjct: 26  FGEILTVHPLSVKVDQRFILPADFLMVPERMTKYEVDLQHTHQYTDDGSTSDTSEALTQR 85

Query: 47  IVLRRGLEKGDRVLMVRMQGGQSYVVLDRLV 77
           IV+R GL  GDRVLM+R+QGGQ YV+LD++V
Sbjct: 86  IVIRSGLAPGDRVLMLRVQGGQRYVILDKVV 116


>B8FNV0.1 B8FNV0_DESHD Phage protein
          Length = 119

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 18/91 (19%)

Query: 5   YGTVTVAAPLQIQVDQRFILSGAALVLPESVMESKLEW--------DG----------RE 46
           +G +    PL ++VDQRFIL    L++PE + + +++         DG          + 
Sbjct: 26  FGEILTVHPLSVKVDQRFILPADFLMVPERMTKYEVDLQHTHQYTDDGSTSDTSEALTQR 85

Query: 47  IVLRRGLEKGDRVLMVRMQGGQSYVVLDRLV 77
           IV+R GL  GDRVLM+R+QGGQ YV+LD++V
Sbjct: 86  IVIRSGLAPGDRVLMLRVQGGQRYVILDKVV 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 425,811,848
Number of extensions: 13363003
Number of successful extensions: 33075
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 33066
Number of HSP's successfully gapped: 14
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)