BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0012.p (320 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEC8.1 B3KEC8_9BACI Putative uncharacterized protein 322 2e-86 Q24QF1.1 Q24QF1_DESHY Putative uncharacterized protein 301 6e-80 B8FNU9.1 B8FNU9_DESHD Phage protein 301 6e-80 B1B8U0.1 B1B8U0_CLOBO Putative uncharacterized protein 269 2e-70 B1D685.1 B1D685_9BACL Putative uncharacterized protein 265 4e-69 >B3KEC8.1 B3KEC8_9BACI Putative uncharacterized protein Length = 321 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/320 (47%), Positives = 226/320 (70%) Query: 1 MELLLKNKEGLLWDIAGIVSDLSWKTSRAGKPATLDMTIIDSGIYQHPKFKISNGDIVQF 60 +EL++ K G +WD+ IV+D++WKTSR KPA+LD+ ++ G+ Q F++ NGDIV+F Sbjct: 2 IELMIDRKNGSVWDLVQIVTDITWKTSRQAKPASLDINYVNDGLAQSKAFEVENGDIVRF 61 Query: 61 RKDGINVFYGFVFSIDTGSDQQIKLTAYDQIRYLLGNGSYVLQDVTASELISKIAKDYGL 120 RKD ++FYG+VFS + G D Q+K+ AYDQ+RYL N +Y + ++I KIAKD+ L Sbjct: 62 RKDNKDLFYGYVFSKEWGMDAQVKVMAYDQLRYLSSNDTYRFTNAKVEDIIRKIAKDFNL 121 Query: 121 KTGVLEETTYRMPSLIEDDKKLLDIIMRAIGGELEKKGRLMAFYDDFGQLTLRGMDSMKL 180 KTG L +T + +P+++E DKKL+DII +A+ L + FYD +G+LTL ++ M L Sbjct: 122 KTGTLADTGHTIPAMLEADKKLIDIICKALDSTLIATKQYYMFYDRYGELTLTNINDMLL 181 Query: 181 DLVLGAGHYLYDYSLKKSIDDDTYNTIYLYKDNKESGKREFYPVSDPENVKRWGILHLYK 240 L +G + D+S KKSID++TYN I + +DNK++GKR+ Y +N+ +WG+L LY+ Sbjct: 182 MLAVGEDSLMTDFSYKKSIDNETYNRIKVVRDNKQTGKRDVYLYQHGQNIAQWGLLQLYE 241 Query: 241 KADDKANAAQIQENADNLLKLHNREKTSLSVQAIGDLRVRAGNLIYVLLDALDTRLFLVE 300 AD+ N AQ+++ A NLL+L NRE+ +LS++AIGDLRVRAGN IYV L + +L++ Sbjct: 242 VADENMNPAQLKQLAQNLLELKNREQQTLSIEAIGDLRVRAGNTIYVNLPEEGLKPYLID 301 Query: 301 QCSHKISGGEHTMSLDIKVV 320 +C+HK S G HTMSL++KVV Sbjct: 302 ECTHKFSDGTHTMSLNMKVV 321 >Q24QF1.1 Q24QF1_DESHY Putative uncharacterized protein Length = 323 Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 220/322 (68%), Gaps = 2/322 (0%) Query: 1 MELLLKNKEGLLWDIAGIVSDLSWKTSRAGKPATLDMTIIDSGIYQHPKFKISNGDIVQF 60 +++++ NK+G +WDI+ IV+D++WKTSR GK +LD T+I + Q FK +NG+IV Sbjct: 2 LKIVIDNKDGNVWDISQIVADVNWKTSRIGKAGSLDFTLIKNAPAQELAFKYANGNIVHV 61 Query: 61 R-KDGINVFYGFVFSIDTGSDQQIKLTAYDQIRYLLGNGSYVLQDVTASELISKIAKDYG 119 + +DG NVFYG++FSID G D+ +K+T YDQ+RYL+ + + + ++T SEL+ +IA + Sbjct: 62 QMEDGTNVFYGYIFSIDGGKDEAVKITCYDQLRYLMASDTSIYTNITVSELVREIAARFQ 121 Query: 120 LKTGVLEETTYRMPSLIEDDKKLLDIIMRAIGGELEKKGRLMAFYDDFGQLTLRGMDSMK 179 L+TG +++T YR+P+ ED++K++D+I +A+ L G+ F+DDFG LT+R ++ Sbjct: 122 LETGRIDDTKYRIPTFSEDNQKMMDMICKALDLTLINTGKNYVFFDDFGALTIRNVEDFL 181 Query: 180 LDLVLGAGHYLYDYSLKKSIDDDTYNTIYLYKDNKESGKREFYPVSDPENVKRWGILHLY 239 LD ++G + D+S K SID DTYN I LYKDNKE+GKRE Y N+ +WG+L L Sbjct: 182 LDFIIGDHSLMTDFSHKVSIDSDTYNVINLYKDNKETGKREPYEKPCSANIAKWGVLQLC 241 Query: 240 KKADDKANAAQIQENADNLLKLHNREKTSLSVQAIGDLRVRAGNLIYVLLDALD-TRLFL 298 + D++ N AQI E NLL L NRE SL ++A+GD+RVR G + + + + FL Sbjct: 242 QSIDEEMNEAQISEMLKNLLTLKNRETKSLKIEALGDIRVRGGCYVRIQIAEYGINQPFL 301 Query: 299 VEQCSHKISGGEHTMSLDIKVV 320 V++C+H+ G HTMSL+++V+ Sbjct: 302 VDECTHRFDGVNHTMSLELRVI 323 >B8FNU9.1 B8FNU9_DESHD Phage protein Length = 323 Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 220/322 (68%), Gaps = 2/322 (0%) Query: 1 MELLLKNKEGLLWDIAGIVSDLSWKTSRAGKPATLDMTIIDSGIYQHPKFKISNGDIVQF 60 +++++ NK+G +WDI+ IV+D++WKTSR GK +LD T+I + Q FK +NG+IV Sbjct: 2 LKIVIDNKDGNVWDISQIVADVNWKTSRIGKAGSLDFTLIKNAPAQELAFKYANGNIVHV 61 Query: 61 R-KDGINVFYGFVFSIDTGSDQQIKLTAYDQIRYLLGNGSYVLQDVTASELISKIAKDYG 119 + +DG NVFYG++FSID G D+ +K+T YDQ+RYL+ + + + ++T SEL+ +IA + Sbjct: 62 QMEDGTNVFYGYIFSIDGGKDEAVKITCYDQLRYLMASDTSIYTNITVSELVREIAARFQ 121 Query: 120 LKTGVLEETTYRMPSLIEDDKKLLDIIMRAIGGELEKKGRLMAFYDDFGQLTLRGMDSMK 179 L+TG +++T YR+P+ ED++K++D+I +A+ L G+ F+DDFG LT+R ++ Sbjct: 122 LETGRIDDTKYRIPTFSEDNQKMMDMICKALDLTLINTGKNYVFFDDFGALTIRNVEDFL 181 Query: 180 LDLVLGAGHYLYDYSLKKSIDDDTYNTIYLYKDNKESGKREFYPVSDPENVKRWGILHLY 239 LD ++G + D+S K SID DTYN I LYKDNKE+GKRE Y N+ +WG+L L Sbjct: 182 LDFIIGDHSLMTDFSHKVSIDSDTYNVINLYKDNKETGKREPYEKPCSANIAKWGVLQLC 241 Query: 240 KKADDKANAAQIQENADNLLKLHNREKTSLSVQAIGDLRVRAGNLIYVLLDALD-TRLFL 298 + D++ N AQI E NLL L NRE SL ++A+GD+RVR G + + + + FL Sbjct: 242 QSIDEEMNEAQISEMLKNLLTLKNRETKSLKIEALGDIRVRGGCYVRIQIAEYGINQPFL 301 Query: 299 VEQCSHKISGGEHTMSLDIKVV 320 V++C+H+ G HTMSL+++V+ Sbjct: 302 VDECTHRFDGVNHTMSLELRVI 323 >B1B8U0.1 B1B8U0_CLOBO Putative uncharacterized protein Length = 324 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 211/327 (64%), Gaps = 12/327 (3%) Query: 1 MELLLKNKEGLLWDIAGIVSDLSWKTSRAGKPATLDMTIIDSGIYQHPKFKISNGDIVQF 60 ++LLL NK G ++DI+ +VS+++WKT R GKP++LD+ ++ + K +SNGD++ F Sbjct: 3 IQLLLDNKNGNVFDISELVSEVTWKTKRKGKPSSLDIQLL-----KDNKINVSNGDVISF 57 Query: 61 RKDGINVFYGFVFSIDTGSDQQIKLTAYDQIRYLLGNGSYVLQDVTASELISKIAKDYGL 120 + D VFYG+VF+ G D +IKLTAYDQIRYLL N +YV ++ AS++I++IAK GL Sbjct: 58 KADNNKVFYGYVFNNSGGKDSEIKLTAYDQIRYLLFNDTYVSKNKKASQIITQIAKGTGL 117 Query: 121 KTGVLEETTYRMPSLIEDDKKLLDIIMRAIGGELEKKGRLMAFYDDFGQLTLRGMDSMKL 180 G +E+T Y +P ++E+DKKLLDII ++ L + A YDDFG LTLR +++MK Sbjct: 118 TIGNIEDTEYIIPQVLEEDKKLLDIIYSSLDKTLMSTKQTYALYDDFGYLTLRNINNMKQ 177 Query: 181 DLVLGAGHYLYDYSLKKSIDDDTYNTIYLYKDNKESGKREFYPVSDPENVKRWGILHLYK 240 ++ L DYS SIDD+TYN + + +DNKE+ R+ Y D N+ +WG L YK Sbjct: 178 VEIISDDSNLGDYSWSNSIDDETYNRVKIVRDNKETKGRDVYIAQDSNNIAKWGRLQYYK 237 Query: 241 KADDKANAAQIQENADNLLKLHNREKTSL------SVQAIGDLRVRAGNLIYVLLDALDT 294 K D+K N AQIQE ++ LKL NREK +L S + DL++RAG+ ++V + Sbjct: 238 KVDEKLNKAQIQEIVNSTLKLKNREKKTLKLKDVVSTDLVEDLKLRAGSGVFVDIKEKGI 297 Query: 295 R-LFLVEQCSHKISGGEHTMSLDIKVV 320 + +L+E+ +H+ G M D+KVV Sbjct: 298 KQYYLIEEATHRFEKGNLVMDFDLKVV 324 >B1D685.1 B1D685_9BACL Putative uncharacterized protein Length = 326 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 133/320 (41%), Positives = 207/320 (64%), Gaps = 1/320 (0%) Query: 1 MELLLKNKEGLLWDIAGIVSDLSWKTSRAGKPATLDMTIIDSGIYQHPKFKISNGDIVQF 60 EL++ N+ G LW+++ +V +LSW T R GK TL TII + YQ ++I+ GD+V+ Sbjct: 4 FELIVDNRNGTLWNLSKLVPELSWSTKRTGKAGTLQFTIIRNPSYQETHYEINCGDVVRL 63 Query: 61 RKDGINVFYGFVFSIDTGSDQQIKLTAYDQIRYLLGNGSYVLQDVTASELISKIAKDYGL 120 R + +F G+VF ++ D+++K+TAYDQ+RYLL +YV +VTA++++ A D GL Sbjct: 64 RMNDTVLFCGYVFVLEDSEDRELKVTAYDQLRYLLETDTYVKTNVTATQVLKDNALDVGL 123 Query: 121 KTGVLEETTYRMPSLIEDDKKLLDIIMRAIGGELEKKGRLMAFYDDFGQLTLRGMDSMKL 180 G + +T + + + +D +K LD+I +A+ L KGR+ YDD G LTL+ +D+M + Sbjct: 124 AIGDIADTIHPIKTFSQDGQKRLDMIYKALDETLIAKGRIYVLYDDAGFLTLKDIDNMTI 183 Query: 181 DLVLGAGHYLYDYSLKKSIDDDTYNTIYLYKDNKESGKREFYPVSDPENVKRWGILHLYK 240 DL+LG G +Y YSLK+ ID DT+N + L KDN+E+GKRE Y + D + +WG L Y+ Sbjct: 184 DLILGDGSLVYGYSLKRDIDSDTFNRVKLVKDNQETGKREAYILEDRTKIGKWGRLQYYQ 243 Query: 241 KADDKANAAQIQENADNLLKLHNREKTSLSVQAIGDLRVRAGNLIYVLLDALD-TRLFLV 299 K DD N AQI + +++L RE+ S + A+G + +RAG + + + + FLV Sbjct: 244 KVDDGLNKAQINAMMERVMELKGREQKSFKLDALGYIGMRAGVKLQITIKEQGINQYFLV 303 Query: 300 EQCSHKISGGEHTMSLDIKV 319 E+C+H++ G EHTMSLD+KV Sbjct: 304 EECTHQMKGDEHTMSLDLKV 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,904,193,984 Number of extensions: 82202201 Number of successful extensions: 197165 Number of sequences better than 1.0e-05: 42 Number of HSP's gapped: 197078 Number of HSP's successfully gapped: 42 Length of query: 320 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 185 Effective length of database: 1,788,859,178 Effective search space: 330938947930 Effective search space used: 330938947930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)