BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0011.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEC9.1 B3KEC9_9BACI Peptidoglycan-binding LysM 242 2e-62 Q24QF0.1 Q24QF0_DESHY Putative uncharacterized protein 190 1e-46 B8FNU8.1 B8FNU8_DESHD Peptidoglycan-binding LysM 190 1e-46 B1D686.1 B1D686_9BACL Peptidoglycan-binding LysM 168 3e-40 B1Q879.1 B1Q879_CLOBO LysM domain protein 147 8e-34 >B3KEC9.1 B3KEC9_9BACI Peptidoglycan-binding LysM Length = 250 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 167/241 (69%), Gaps = 10/241 (4%) Query: 1 VEEYGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIES 60 + +YGFFLSFN E++FR PVNPE +++K+SG+ KSYT+ LGE+NAI +PKLTEI+ ES Sbjct: 12 MSDYGFFLSFNNQEEVFRFPVNPERIDVKDSGEGKSYTVAGLGEVNAILHPKLTEISFES 71 Query: 61 IFPAQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGV---NLKGEQDHSA 117 FP + YPFV + S+ +L P EYV I+ WM+SRRP+RFV++G+ L G + Sbjct: 72 FFPGRVYPFVHLGSD--QKLKLPIEYVNTIKGWMESRRPVRFVMTGLVPDPLSGTDGKNV 129 Query: 118 VP--NDLALNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPK- 174 V +NMA SIESF W +G+ D+E+S++LK+YVFY A V VK + A K Sbjct: 130 VRAMKSFGINMAASIESFNWNTMSGSPEDIEFSITLKRYVFYGARKVMPVKDKKAAAVKT 189 Query: 175 --RASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLNGIKDSELKKLPIGKVLKL 232 R D+ P +YT+ GD+LWSIA+K+LG G ++ IQKLNGIKD E++KL +G+VLK+ Sbjct: 190 KDRPDDRKKPTSYTVTKGDTLWSIAQKLLGSGSRHADIQKLNGIKDHEVRKLAVGRVLKI 249 Query: 233 P 233 P Sbjct: 250 P 250 >Q24QF0.1 Q24QF0_DESHY Putative uncharacterized protein Length = 223 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 146/239 (61%), Gaps = 27/239 (11%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y LSFN ++ F LPV P +L+ +SG++K+Y I+ LGEIN I P+ E SIFP Sbjct: 3 YSIELSFNNRDESFELPVMPGSLDASKSGNNKTYDIIALGEINIIKNPQRIEYGFSSIFP 62 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 AQ YPFV V++ LL+P EYV++I +WM+S++PIRF+ + + Sbjct: 63 AQRYPFVTVQT-----LLQPIEYVQLIIRWMESKQPIRFIFTS-------------DRFE 104 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKI---------VKGQVKAEPK 174 +N SIESF W+ AG SGD+EYSL LK YV Y A V I P Sbjct: 105 INTLASIESFDWEEVAGGSGDLEYSLKLKSYVPYAAQKVPIEDLIDKSASTVAVPPPAPV 164 Query: 175 RASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLNGIKDSELKKLPIGKVLKLP 233 R ++ PKTYT+ AGD+LW++A+K LG+G ++ IQKLN I D+E+++L IG+VLKLP Sbjct: 165 RPNETKPPKTYTLVAGDTLWAVAQKHLGNGARWPEIQKLNDITDAEIRRLQIGRVLKLP 223 >B8FNU8.1 B8FNU8_DESHD Peptidoglycan-binding LysM Length = 223 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 146/239 (61%), Gaps = 27/239 (11%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y LSFN ++ F LPV P +L+ +SG++K+Y I+ LGEIN I P+ E SIFP Sbjct: 3 YSIELSFNNRDESFELPVMPGSLDASKSGNNKTYDIIALGEINIIKNPQRIEYGFSSIFP 62 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 AQ YPFV V++ LL+P EYV++I +WM+S++PIRF+ + + Sbjct: 63 AQRYPFVTVQT-----LLQPIEYVQLIIRWMESKQPIRFIFTS-------------DRFE 104 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKI---------VKGQVKAEPK 174 +N SIESF W+ AG SGD+EYSL LK YV Y A V I P Sbjct: 105 INTLASIESFDWEEVAGGSGDLEYSLKLKSYVPYAAQKVPIEDLIDKSASTVAVPPPAPV 164 Query: 175 RASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLNGIKDSELKKLPIGKVLKLP 233 R ++ PKTYT+ AGD+LW++A+K LG+G ++ IQKLN I D+E+++L IG+VLKLP Sbjct: 165 RPNETKPPKTYTLVAGDTLWAVAQKHLGNGARWPEIQKLNDITDAEIRRLQIGRVLKLP 223 >B1D686.1 B1D686_9BACL Peptidoglycan-binding LysM Length = 262 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 140/261 (53%), Gaps = 39/261 (14%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 + + +N ++ + PV P+ + IK G K Y IV G I+ I P L EI+ +S FP Sbjct: 7 FTMMIGWNNGQEGWEFPVLPDEINIKRDGSGKDYNIVGTGPISTIEKPGLAEISFKSFFP 66 Query: 64 AQHYPF------------VLVRSEGPNRLLR-------------PFEYVEMIQKWMKSRR 98 +YPF VL R+E N +L+ P YV + +WM S Sbjct: 67 GHNYPFNQNISHWKKYDPVLDRTESLNTILKVMRGVAWNTKVPDPNAYVNDMNRWMHSGY 126 Query: 99 PIRFVLSGVNLKGEQDHSAVPNDLALNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQ 158 P+RF+ G N QD SA +++ MSIESF AG+ GD+ YSL LK+YVF+ Sbjct: 127 PVRFIYVGSN---SQDDSA-----KISLPMSIESFERWEEAGSPGDIFYSLKLKEYVFHY 178 Query: 159 ASPVKIVKGQ------VKAEPKRASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQK 212 VK V +K R+ D+ PKTYT+K GD+L +A LGD +++ IQK Sbjct: 179 PQKVKAVTTADGKTKLLKGSSTRSDDRVPPKTYTLKPGDTLIKVAGMQLGDSARWRDIQK 238 Query: 213 LNGIKDSELKKLPIGKVLKLP 233 LNGI D+ELK+LP+GKVLKLP Sbjct: 239 LNGITDAELKRLPVGKVLKLP 259 >B1Q879.1 B1Q879_CLOBO LysM domain protein Length = 222 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 126/238 (52%), Gaps = 26/238 (10%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y +L N+ E+ F LPV PE +E E GD+K Y I++LGEIN I PKLTEI+ ES FP Sbjct: 3 YKMYLGINDGEEGFILPVLPEKVEFDEDGDNKIYDIINLGEINTINKPKLTEISFESFFP 62 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 P+ V SE +L P Y+ I++W ++ IRF+ +G + L Sbjct: 63 KHKGPY--VSSE---QLFEPSFYIGKIREWRDKKQKIRFIFTG-------------SPLE 104 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKG--------QVKAEPKR 175 +N ++E+F G GDV YS+ LK+Y Y A V IV + + P R Sbjct: 105 INDLFTVENFKPYEEGGEVGDVHYSIELKRYKNYAAKKVVIVNKKDSNKKAVKTSSNPPR 164 Query: 176 ASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLNGIKDSELKKLPIGKVLKLP 233 S+ PKT+T+ D+LW I+KK LGDG K+ I LN K + G+VL+LP Sbjct: 165 PSNTNKPKTHTVSGNDTLWHISKKYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,374,144,096 Number of extensions: 53676569 Number of successful extensions: 172666 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 172673 Number of HSP's successfully gapped: 66 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)