BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0010.p (649 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2V2M0.1 B2V2M0_CLOBA Putative phage protein 130 3e-28 B8FNU7.1 B8FNU7_DESHD Putative uncharacterized protein 100 4e-19 B1D687.1 B1D687_9BACL Phage tape measure protein 100 4e-19 Q24QE9.1 Q24QE9_DESHY Putative uncharacterized protein 100 5e-19 A5I2K7.1 A5I2K7_CLOBH Putative phage protein 97 5e-18 >B2V2M0.1 B2V2M0_CLOBA Putative phage protein Length = 649 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 116/462 (25%), Positives = 196/462 (42%), Gaps = 85/462 (18%) Query: 216 ADWNKLNDNVDAAMGKIGVKALGALRPVMDTLNQALTSGQLAPTIDALANGFLVIANVIG 275 + + + +N ++++G+ G AL A PVM+ +N ++G D ++ G V+A I Sbjct: 243 SQFENIKENFNSSLGEAGQGALEAFAPVMEIINGMFSNGSFQVFFDLISIGLGVLATTIS 302 Query: 276 MIVDGLLWLVGVVQENWAIIEPXXXXXXXXXXXXXXXQVYXXXXXXXX-------XNWPX 328 W+ +V+ NW IIE V+ N P Sbjct: 303 -------WICEIVRNNWGIIESILIAIGIYLLGTIIPSVFTLIAQGLAVAATWIIANLPI 355 Query: 329 XXXXXXXXXXXXXFQNLGISAGQVVGAIAGAFSWLMAVFQNIWIGLQNGFYVVWDGIVNG 388 GI+ QV G I G F + N + + N F + + + N Sbjct: 356 LMVIGAIALLIYALMQCGITTQQVCGFIGGIFMVIFGYIYNRIVFIWNIFASLAEFVENV 415 Query: 389 FNTAVLFVKQLLYGLGMGTLDVLYNMAVGVESFADGFVKVMVEAIRWVVDKFNGMAEALS 448 FN + +++L Y + +N V+ + A+ W+V+K Sbjct: 416 FNHPLYSIQRLFYNI--------WNY----------IVEFVGSALDWIVEK-------AK 450 Query: 449 KIPFFDKM----GIGTIKLDLDGLKVPHAASELVDKYRKEFKTLEPPEDITKQETKHKEY 504 IPF + IG+ K+D +P +PPED + + EY Sbjct: 451 SIPFLKDLIGDFSIGSFKVD-----IP-----------------DPPEDY--KTVQRMEY 486 Query: 505 VDTKDAFNSSYTQAKEW---TDNKVESISSAFSDKGRDAKKLTKPPASGQQIQNTAGLFA 561 D + F+ YT+A + NK++ ++S + + S + N +G Sbjct: 487 KDLGNEFDFGYTKAGNFLSGAGNKLQDVTSKIDNFKNNINLDDIRNKSNNSLGNNSGGIP 546 Query: 562 NQGG-----------NLNNVNRVNE----VGSINDTVDISSEDLEMMRELAEIQAIQNFV 606 N G N N N V+E + IND+V++S+E+LE+M +LAE++++QNF+ Sbjct: 547 NDMGGGSDALTSAIDNTNLGNNVSEGSEAIKGINDSVEVSNENLELMNDLAELESLQNFI 606 Query: 607 ELTPTVQVTTGNINNAGDIDTIINKIGQKLNEEFVSTAQGVY 648 LTPTVQVTTG+I DI+TII++I + E ++A+G+Y Sbjct: 607 TLTPTVQVTTGDIKEEADINTIISRIESYMENEMTNSAEGLY 648 >B8FNU7.1 B8FNU7_DESHD Putative uncharacterized protein Length = 565 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 122/250 (48%), Gaps = 38/250 (15%) Query: 399 LLYGLGMGTLDVLYNMAVGVESFADGFVKVMVEAIRWVVDKFNGMAEALSKIPFFDKMGI 458 L+ GL +G + VL ++V +G KV +A ++VD G A+ +I GI Sbjct: 353 LVIGLVIGLITVLGALSV----VTNGVKKVFSDAFGFIVDVAEGAINAVLRILNGAIRGI 408 Query: 459 GTIKLDLDGLKVPHAASELVDKYRKEFKTLEPPEDITKQETKHKEYVDTKDAFNSSYTQA 518 +V + L+ K+ K ++ D ++ + +E ++ F+ + Sbjct: 409 N---------EVSGFFANLLGIEAKQIKEIQFKADFSEFKKAGQEAIEN---FSMDALKE 456 Query: 519 KEWTDNKVESISSAFSDKGRDAKKLTKPPASGQQIQNTAGLFANQGGNLNNVNRVNEVGS 578 K DNK + D G D G N L++++ V EVG Sbjct: 457 KLGFDNKFQ----MQEDYGWD------------------GSIPNIDDALSSIDHVGEVGK 494 Query: 579 INDTVDISSEDLEMMRELAEIQAIQNFVELTPTVQVTTGNINNAGDIDTIINKIGQKLNE 638 I DTVDISSEDL++MRELAE++ IQNFV LTPTV VTTG+I N D DTI+ KI L + Sbjct: 495 IGDTVDISSEDLKIMRELAEMKNIQNFVTLTPTVSVTTGDIRNGSDADTIVAKIKMMLEK 554 Query: 639 EFVSTAQGVY 648 + S+A VY Sbjct: 555 DIASSASAVY 564 >B1D687.1 B1D687_9BACL Phage tape measure protein Length = 719 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/79 (62%), Positives = 60/79 (75%) Query: 570 VNRVNEVGSINDTVDISSEDLEMMRELAEIQAIQNFVELTPTVQVTTGNINNAGDIDTII 629 V V EVG IN+TVDISSED+EMMR +AE+ AIQNFV LTPTVQVTTG I+ D+D +I Sbjct: 640 VGEVGEVGKINNTVDISSEDIEMMRNIAEMNAIQNFVTLTPTVQVTTGPISKDVDVDEVI 699 Query: 630 NKIGQKLNEEFVSTAQGVY 648 +IG + +E S+AQG Y Sbjct: 700 RRIGSTMEQEIQSSAQGAY 718 >Q24QE9.1 Q24QE9_DESHY Putative uncharacterized protein Length = 577 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 122/250 (48%), Gaps = 38/250 (15%) Query: 399 LLYGLGMGTLDVLYNMAVGVESFADGFVKVMVEAIRWVVDKFNGMAEALSKIPFFDKMGI 458 L+ GL +G + VL ++V +G KV +A ++VD G A+ +I GI Sbjct: 365 LVIGLVIGLITVLGALSV----VTNGVKKVFSDAFGFIVDVAEGAINAVLRILNGAIRGI 420 Query: 459 GTIKLDLDGLKVPHAASELVDKYRKEFKTLEPPEDITKQETKHKEYVDTKDAFNSSYTQA 518 +V + L+ K+ K ++ D ++ + +E ++ F+ + Sbjct: 421 N---------EVSGFFANLLGIEAKQIKEIQFKADFSEFKKAGQEAIEN---FSMDALKE 468 Query: 519 KEWTDNKVESISSAFSDKGRDAKKLTKPPASGQQIQNTAGLFANQGGNLNNVNRVNEVGS 578 K DNK + D G D G N L++++ V EVG Sbjct: 469 KLGFDNKFQ----MQEDYGWD------------------GSIPNIDDALSSIDHVGEVGK 506 Query: 579 INDTVDISSEDLEMMRELAEIQAIQNFVELTPTVQVTTGNINNAGDIDTIINKIGQKLNE 638 I DTVDISSEDL++MRELAE++ IQNFV LTPTV VTTG+I N D DTI+ KI L + Sbjct: 507 IGDTVDISSEDLKIMRELAEMKNIQNFVTLTPTVSVTTGDIRNGSDADTIVAKIKMMLEK 566 Query: 639 EFVSTAQGVY 648 + S+A VY Sbjct: 567 DIASSASAVY 576 >A5I2K7.1 A5I2K7_CLOBH Putative phage protein Length = 720 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 45/300 (15%) Query: 377 GFYVVWDGIVNG-FNTAVLFVKQLL---YGLGMGTLDVLYNMAVGVESFADGFVKVMVEA 432 G V GI+ G F A+ F+ L Y L + + + YN +FA+ F V + Sbjct: 437 GTSVSATGIIAGSFMVALAFIGNLFVAFYNLVVDIIALFYNH---FSAFAEFFANVFNDP 493 Query: 433 IRWVVDKFNGMAEALSKIPFFDKMGIGTI------------KLDLDGLKVPHAASELVDK 480 I ++ F MA+ + I I TI + L G A +LV K Sbjct: 494 IGSIIRLFAAMADEVLGILKSIASAIDTIFGSNLANAVGNWQSGLQG-----AVDKLVGK 548 Query: 481 YRKEFKTLEPPEDITKQETKHKEYVDTKDAFNSSYTQAKEWTDNKVESISSAFS-----D 535 + +F+ ++ H + + A++S YT K D + + F+ D Sbjct: 549 PKIQFQKMDSS-------AMHLDRFEYGKAYDSGYTVGKNIGDKF--DLGNIFNKGNIPD 599 Query: 536 KGRDAKKLTKPPASGQQIQNTAGLFA-NQGGNLNNVNRV------NEVGSINDTVDISSE 588 G+ A G TAG N+GG L N N + +I+D +DIS+E Sbjct: 600 MGKMPDMAAWNKAQGPGTLGTAGDSGKNKGGKLPNAGNKGLKDANNHLKNIDDKIDISNE 659 Query: 589 DLEMMRELAEIQAIQNFVELTPTVQVTTGNINNAGDIDTIINKIGQKLNEEFVSTAQGVY 648 LEMMR+LAE+++IQNFV LTPTVQVTTG+I DI+ II+KI + E ++A+GVY Sbjct: 660 HLEMMRDLAEMESIQNFVTLTPTVQVTTGDIKEEADINKIISKIENYMENELANSAEGVY 719 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,094,228,056 Number of extensions: 117996243 Number of successful extensions: 405626 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 405612 Number of HSP's successfully gapped: 23 Length of query: 649 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 507 Effective length of database: 1,722,912,073 Effective search space: 873516421011 Effective search space used: 873516421011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)